Rhincodon typus (whale shark): 125481611
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Entry
125481611 CDS
T06055
Symbol
fdft1
Name
(RefSeq) squalene synthase
KO
K00801
farnesyl-diphosphate farnesyltransferase [EC:
2.5.1.21
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp00100
Steroid biosynthesis
rtp01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09100 Metabolism
09103 Lipid metabolism
00100 Steroid biosynthesis
125481611 (fdft1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01006 Prenyltransferases [BR:
rtp01006
]
125481611 (fdft1)
Enzymes [BR:
rtp01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.21 squalene synthase
125481611 (fdft1)
Prenyltransferases [BR:
rtp01006
]
Terpene biosynthesis
Squalene/phytoene synthase
125481611 (fdft1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SQS_PSY
HAUS4
Motif
Other DBs
NCBI-GeneID:
125481611
NCBI-ProteinID:
XP_048449352
LinkDB
All DBs
Position
Unknown
AA seq
380 aa
AA seq
DB search
MSETLKKCYVYLNQTSRSFAAVIQALDGDLRQAVCIFYLVLRALDTVEDDMSIPLEVKIP
MLQNFHTYLYQPEWRYSQSREKDRQVLEDFPSISLEFRLLAKVYQDVIANICHKMGAGMA
EFLGKKVGSIKEWDTYCHYVAGLVGIGLSRLFSASELEDPVVGQDTELANSMGLFLQKTN
IIRDYLEDQQEGREFWPQEVWSKYAEKLSDFTKPSNVQAALQCLNELITNALQHVPDVIK
YLSRLHNQSVFNFCAIPQVMAIATLAACYNNPQVFRGVVKIRKGQAVTLMLEATNMEAVK
GMIRQYTQMIGQKVPGAGRSGARTQQIVVKVESLSQCDGELMSRGHLSPIYLSLAVFLAA
VSWQYWQTLTHSSEEYVHGH
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaaaccctgaaaaagtgctatgtttatctgaaccagacgagccgcagttttgct
gctgtcattcaggcactggatggtgatctacgtcaagcggtgtgcatcttttacctggtg
ttgcgggctctagacacagtggaagatgacatgtccatccccctggaggtgaagatccca
atgttacagaacttccacacttatttgtaccagcctgagtggaggtacagccagagtcgg
gaaaaagaccgccaggtgctggaggatttcccatcgatatccttggaattccgcttactg
gccaaggtttaccaggatgtgattgcaaatatctgccacaagatgggagctggcatggct
gagtttttgggaaaaaaggttggatccatcaaagaatgggacacgtactgtcactatgtg
gcaggacttgtgggaatcggcttgtcccgtctgttctcggcctctgaacttgaggatcca
gttgttgggcaggacactgaactggccaactccatggggctcttcctgcagaaaaccaac
atcattcgggattatctggaggaccaacaggaaggtcgggagttctggccacaggaggtg
tggagcaagtatgcagagaaactgtctgacttcaccaaaccctcaaatgttcaggcagca
ctgcagtgcttgaacgagctgattacaaatgctctgcagcatgtcccagatgtcatcaag
tacttatcccggcttcacaatcagagtgtcttcaacttctgtgcgattccacaggtgatg
gctatagccacactggctgcttgttataacaacccgcaggttttccgtggtgtggtgaag
atccggaaaggccaggctgtcaccctgatgctggaggcaactaacatggaagctgtgaaa
gggatgattcggcagtatacccaaatgattggacagaaagttccaggtgcagggagatct
ggagccagaacgcagcagattgtggtaaaagtggagtccctgagccagtgtgatggggaa
ctgatgtcccgtggtcatctttcacccatttacctgtccttagccgtattcttggctgcg
gttagttggcaatactggcagaccctgactcacagctcagaggagtatgtacatgggcac
taa
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