Rhincodon typus (whale shark): 125481746
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Entry
125481746 CDS
T06055
Symbol
prpf19
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03040
Spliceosome
rtp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125481746 (prpf19)
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
125481746 (prpf19)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
125481746 (prpf19)
04121 Ubiquitin system [BR:
rtp04121
]
125481746 (prpf19)
03400 DNA repair and recombination proteins [BR:
rtp03400
]
125481746 (prpf19)
Enzymes [BR:
rtp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
125481746 (prpf19)
Spliceosome [BR:
rtp03041
]
Complex B
Other components
Prp19 complex
125481746 (prpf19)
Complex C
Prp19-CDC5 complex
125481746 (prpf19)
Ubiquitin system [BR:
rtp04121
]
Ubiquitin ligases (E3)
U-box type E3
125481746 (prpf19)
DNA repair and recombination proteins [BR:
rtp03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
125481746 (prpf19)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
WDR55
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
EIF3I
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
U-box
Beta-prop_IFT140_1st
Beta-prop_TEP1_C
Beta-prop_SPT8
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_EIPR1
Beta-prop_DCAF12
Beta-prop_RIG_2nd
Beta-prop_Nup120_160
WD40_RFWD3
Beta-prop_DCAF4
PROPPIN
Beta-prop_WDR19_1st
eIF2A
zf-Nse
Nucleoporin_N
ATG16
DUF1830
Cep57_MT_bd
Beta-prop_WDR35_TULP_N
Motif
Other DBs
NCBI-GeneID:
125481746
NCBI-ProteinID:
XP_048449609
LinkDB
All DBs
Position
Unknown
AA seq
413 aa
AA seq
DB search
SLLSVSNEVPEHPCVSPVSNHVFERRLIEKYIAENGTDPINGQPLSEDQLIDIKASHPIR
PKPPSATSIPAILKALQDEWDAVMLHSFTLRQQLQTTRQELSHALYQHDAACRVIARLTK
EVTAAREALATLKPQAGLAVPQAPPVTPAATPGAGEPMEVGEQVGMTPEIIQKLQDKATV
LTTERKKRGKTVPEELVRGEDFSKYRQVASHVGLHSASVPGILALDLCPSDTAKVLTGGA
DKNVVVFDKNSEQILATLKGHSRKVTSVVYHPSENIVFSASPDTTIRIWSVSSTSCVQVV
RAHEGSVTGLSLHATGDYLLSASDDQYWAFSDIRTGRVLTKVTDEAAGCALTCAQFHPDG
LIFGTGTIDSQIKIWDLKVSQTRPCGIDVRQQCQHTAARPLPSLLIGSVLLLC
NT seq
1240 nt
NT seq
+upstream
nt +downstream
nt
tctctgctttcagtttcgaatgaggtcccggagcacccttgtgtctctccagtctccaac
cacgtgtttgagcggcggctcattgagaagtacattgcggagaatgggacagaccccatc
aatgggcagcccctgtctgaggaccaactcatcgacatcaaagcaagccatcctatcaga
ccaaagcctccctcagccaccagcatcccagcaatcctcaaagctctacaggatgagtgg
gacgcagtgatgttgcacagcttcacactccggcaacagctgcagaccacacgccaggag
ttatctcatgccctttaccagcacgatgctgcctgcagggtcatcgcacgtctgaccaag
gaggtgactgcagctcgagaagctctggcaacgctgaagccccaggctggtttggccgtg
ccccaggcaccaccagttactcctgctgcaactcctggcgcaggggaaccgatggaggtc
ggggagcaggtcggaatgactccagagatcattcagaagcttcaagataaggcaactgtg
ctgaccacggagcgtaagaagagaggcaaaactgtccctgaggagctggtgaggggtgaa
gatttcagcaagtatcggcaggttgcctcccatgtgggtctgcacagtgccagtgtccct
ggcatcctggctctcgacctttgcccctcagacacggccaaagtgcttactggcggagct
gacaagaatgtggtggtgtttgacaagaactccgagcagatcctggccacgctgaaaggt
cacagcaggaaggtgacgagtgtggtgtaccatcccagcgagaacatcgtcttctcagct
tcccccgacacaaccatccgcatctggtcggtctccagcacgtcctgtgtgcaagtggtc
cgggctcacgagggctctgtcactggcctcagtctccacgccaccggggactacctgctg
agcgcttccgatgaccagtattgggcattctctgatatccgtaccggccgcgttctcacc
aaggtcacagatgaagctgctggctgtgccctgacctgcgcccagttccaccctgatggc
ctcatcttcggcacaggaaccattgactcacagatcaagatctgggacttaaaggtaagt
cagactcgtccctgtgggatcgatgtaagacagcaatgtcagcacacagcagctcgaccc
ctcccctcgctcctgatcggctcagtcctcttgttatgtt
DBGET
integrated database retrieval system
