Rhincodon typus (whale shark): 125487351
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Entry
125487351 CDS
T06055
Symbol
snrpd1
Name
(RefSeq) small nuclear ribonucleoprotein Sm D1
KO
K11087
small nuclear ribonucleoprotein D1
Organism
rtp
Rhincodon typus (whale shark)
Pathway
rtp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rtp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
125487351 (snrpd1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rtp03041
]
125487351 (snrpd1)
03032 DNA replication proteins [BR:
rtp03032
]
125487351 (snrpd1)
Spliceosome [BR:
rtp03041
]
Complex A
U1 snRNP components
Sm proteins
125487351 (snrpd1)
U2 snRNP components
125487351 (snrpd1)
Complex B
U1 snRNP components
125487351 (snrpd1)
U4/U6.U5 tri-snRNP components
125487351 (snrpd1)
Complex C
U2 snRNP components
125487351 (snrpd1)
DNA replication proteins [BR:
rtp03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (fungi)
Sm core complex
125487351 (snrpd1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
EBNA2_Core
YomU_Tube
Gemin7
AAA_RNF213_3
Hfq
Phage_Hfq
SM-ATX
Motif
Other DBs
NCBI-GeneID:
125487351
NCBI-ProteinID:
XP_048474599
LinkDB
All DBs
Position
2:142593804..142603919
Genome browser
AA seq
141 aa
AA seq
DB search
MLIVGRVVAPPFRGPREQSASIMKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNT
HLKAVKMTLKNREPVQLETLSIRGNNIRYFVLPDSLPLDTLLVDVEPKVKSKKREAVAGR
GRGRGRGRGRGRGRGRGGPRR
NT seq
426 nt
NT seq
+upstream
nt +downstream
nt
atgcttattgtagggcgggttgtggcgcctccattccgcggcccccgggaacaatctgcc
tccatcatgaagctggtccgatttctgatgaaattgagccacgagactgtgaccattgag
ttgaaaaatggaacccaggtacacggcactatcacaggcgtggatgtcagtatgaatact
cacctgaaagctgtgaagatgacattaaagaacagagaacctgtacagcttgagacactg
agtatccgaggaaacaacattcgctactttgttctcccagacagcttaccgttggacacg
ttgctagttgacgttgagcccaaagtcaaatcaaaaaagagagaagcagttgctggccgg
ggccgagggagaggtcgaggcaggggaagaggacgtgggagaggccgaggaggaccaagg
cgataa
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integrated database retrieval system
