KEGG   Rhincodon typus (whale shark): 125487844
Entry
125487844         CDS       T06055                                 
Symbol
rbm8a
Name
(RefSeq) RNA-binding protein 8A
  KO
K12876  RNA-binding protein 8A
Organism
rtp  Rhincodon typus (whale shark)
Pathway
rtp03013  Nucleocytoplasmic transport
rtp03015  mRNA surveillance pathway
rtp03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rtp00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    125487844 (rbm8a)
  09122 Translation
   03013 Nucleocytoplasmic transport
    125487844 (rbm8a)
   03015 mRNA surveillance pathway
    125487844 (rbm8a)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rtp03019]
    125487844 (rbm8a)
   03041 Spliceosome [BR:rtp03041]
    125487844 (rbm8a)
Messenger RNA biogenesis [BR:rtp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     125487844 (rbm8a)
Spliceosome [BR:rtp03041]
 Complex C
  Other components
   EJC/TREX
    125487844 (rbm8a)
SSDB
Motif
Pfam: RRM_1 RRM_3 RRM_5 RRM_occluded
Other DBs
NCBI-GeneID: 125487844
NCBI-ProteinID: XP_048476241
LinkDB
Position
46:complement(6003365..6016400)
AA seq 191 aa
MGDAANGGVGGGVHKVFCISVRGEVGQIEGCQAKQLGFRKSIHKLKEKAKKRKGRGFGSE
EGARSRLREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNLH
LNLDRRTGYLKGYALVEYETYKEAQAAMEGLNGSELAGQPISVDWGFVRGPPKSKRRSGR
RRSRSPDRKRH
NT seq 576 nt   +upstreamnt  +downstreamnt
atgggagatgcagccaatggaggggttggcgggggggtgcacaaggtgttctgcatctct
gtcagaggcgaagtgggacagatcgagggttgtcaggcaaagcagctgggcttcaggaaa
agtattcataagctgaaggaaaaggccaagaagcgaaagggacgaggctttggctctgag
gaaggtgctcgttctcgacttcgtgaagactatgattcagtggagcaggacggtgacgaa
ccaggaccacagcgctctgtggaagggtggattctctttgtgacgggggtccacgaagag
gccacagaggaagatattcacgacaaattcgcagaatacggcgaaatcaagaacctgcac
ctcaatctggatcgccgcaccggctaccttaagggctatgctttggtggagtacgagacc
tacaaggaggcccaggcagcgatggagggactgaatggctcggagttggcgggccagccc
atcagcgtggactggggctttgtccgaggaccacccaagagcaagaggcggagtgggcgc
aggaggagccggagtccagatcggaagcgacattaa

DBGET integrated database retrieval system