Rhizobium tropici: RTCIAT899_CH07015
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Entry
RTCIAT899_CH07015 CDS
T02432
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rtr
Rhizobium tropici
Pathway
rtr03030
DNA replication
rtr03430
Mismatch repair
rtr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RTCIAT899_CH07015
03430 Mismatch repair
RTCIAT899_CH07015
03440 Homologous recombination
RTCIAT899_CH07015
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtr03032
]
RTCIAT899_CH07015
03400 DNA repair and recombination proteins [BR:
rtr03400
]
RTCIAT899_CH07015
Enzymes [BR:
rtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RTCIAT899_CH07015
DNA replication proteins [BR:
rtr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RTCIAT899_CH07015
DNA repair and recombination proteins [BR:
rtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RTCIAT899_CH07015
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
Motif
Other DBs
NCBI-ProteinID:
AGB70806
LinkDB
All DBs
Position
1438843..1442337
Genome browser
AA seq
1164 aa
AA seq
DB search
MADAGGSGVAAPVGEMPEFVHLRVHSAYSLLEGALPLKKILAKAAGDSQPAIAITDTNNL
FVALEFSQKAMDEGLQPIIGCQVSIDMEDGGESEKRGPQQALAKMPSIVLLAATERGYER
LVDLVSRAYLGGEGNNAVHITASWLDEIGTGGLIALTGSLTGPVDMALKEEHAAQALSRL
LRLKQLFDDRLYVELQRHGTYDRRHEQKMIKLAYEHEIPLVATNEAFFPTRDDYDAHDAL
MAVAHNAIVSDDTRFRLTPDHYLKSRADMAKLFANLPEALENTVEIARRCSFVLKTRSPI
LPRFTGATDDPEEAGRAEAAELRAQAVEGLEQRITSLGMAPGYEEKDYRDRLEFELSVIE
RMKFPGYFLIVADFIKWAKRHDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLN
PERVSMPDFDIDFCQDRREEVIRYVQAKYGREQVAQIITFGSLQARAALRDVGRVLEMPY
GQVDKICKLVPNNPANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTH
AAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDF
VAKRGISIDLASIPLDDRKTYDMLSRGETVGVFQVESAGMRKALIGMRPDCIEDIIALVA
LYRPGPMENIPVYNARKHGEEEIESIHPKIDYLLKETQGVIVYQEQVMQVAQVLSGYSLG
EADLLRRAMGKKIKAEMDQQRERFVDGAIKNGVSKGQADVIFDLLAKFANYGFNKSHAAA
YAIVSYQTAYMKAHYPVEFLAASMTLDMSNTEKVNDFRQDAKRLGIEVIAPSVQTSFRHV
ETGDNRIYYALAAIKGVGESAVDHIVEVRGDQPFACIEDFCLRIDPKQINRRVLESLICA
GAFDCFEIDRAQLIGGLDRVMGYAQVAQENKRSGQHDMFGSAASGPEKIVFPPYTPWLAS
ERLLREFQVLGFYLTAHPLDTYKSVLDKMRVQPFADFSAAVKQGASNGRLAGTVISKQER
KTRTGNKMGIFVFSDASGQFEAVLFSETLNQYRDVLEVGKSFVITAQADERPEGISLRLQ
TAQSLEEKSLQMQKALRVYVRDSGPLKAVAAHLNTKGDGLVSFIVIKEEGLREVEVALPE
KYRITPEIAAALRTAPGVIDVELV
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgcaggtggcagcggcgtggcagcgccggttggcgaaatgccggaatttgtg
cacctcagggttcattccgcctattctctgctagagggcgcattgccgctcaagaagata
ttggccaaggctgccggggacagtcagccggctattgcgatcaccgataccaacaatctg
ttcgtcgccctggaattctcgcagaaggcgatggatgaggggctgcagccgatcattggc
tgtcaggtatcgatcgatatggaggatggcggcgaaagcgagaagcgcgggccgcagcaa
gctttggcgaagatgccatccatcgtgctgcttgccgcgaccgagcggggatatgagcgc
ctcgtcgatctcgtcagccgcgcctatctcggcggcgagggcaacaacgccgttcacatc
acagcctcatggcttgatgagatcggtacgggagggttgatcgcgctcaccggttcgctc
accggcccggtcgatatggctttgaaagaagagcacgccgcacaggcgctctcccggttg
ttgaggctgaagcagctgttcgatgacaggctctatgtcgaattgcagcgccacggcacc
tatgatcgtcgtcacgagcagaagatgatcaagctggcttacgagcacgagatcccgctc
gttgccaccaacgaagcctttttcccgacgcgggacgattacgatgcgcatgacgccttg
atggcagtggcccacaatgccatcgtctcggacgatacgcgatttcgcctcacgccggat
cactatctgaagagccgcgcagacatggcaaagcttttcgccaacttgccggaagcgctt
gagaacacggtcgagatcgctcgtcgctgctccttcgtgttgaagacccgctcgccgatc
ctgccgcgctttaccggggcgactgacgaccctgaagaggctggacgcgccgaggcggcc
gagctgcgcgctcaggcggttgagggcctcgagcagcgcataacctcgcttggcatggca
ccgggttacgaggagaaggattatcgcgatcggctggaattcgaactgagcgtcatcgag
cgcatgaagtttcccggctactttctgatcgttgccgacttcatcaaatgggccaagcgc
cacgatatccccgtcggccccggccgcggttccggtgcgggttcgctggtcgcctacgcc
ctgaccatcaccgacgtcgatccgttgcgcttctcgctgctgttcgagcgcttcctcaac
ccggaacgcgtctccatgccggacttcgatatcgacttctgtcaggaccggcgtgaagag
gtgatccgttacgtgcaagccaaatacggccgcgagcaggtggcgcagatcatcaccttc
ggttctctgcaggcacgcgccgccttgcgcgatgtcggccgcgttctcgaaatgccctat
ggccaggtcgacaagatctgcaagctggtgccgaacaatcccgccaatccgaccccgctg
agcaaggcgatcgaggaagagccgcgcctgcaggaggaggcggacaaggagccggttgtc
gcccgtcttctcgatatcgcccagaagatcgagggcctctatcgccacgcatcgacccat
gctgcgggtatcgtcatcggcgaccgcccgctgtcgaagctcgtaccgatgtatcgcgac
ccgcgctccgatatgccggtcacccagttcaacatgaaatgggtggaacaggccggcctg
gtgaagttcgacttcctcggtcttaagacgctgactgtcctcaagacggcggtcgatttc
gtcgccaagcgcggcatttcgatcgatctcgccagcatcccgctcgacgacaggaagacc
tacgacatgctctcgcgcggcgagacggtcggcgtgttccaggtggaaagtgcgggcatg
cgcaaggcgctgatcggcatgcgcccggactgcatcgaggatattatcgcgctcgtggcg
ctttatcgtccgggcccaatggagaacatcccggtctacaatgcccgcaagcatggcgag
gaagagatcgaatcgatccacccgaagatcgactatctcctgaaggaaactcagggcgtt
atcgtctatcaggagcaggtgatgcaggtcgcccaggtgctctcgggctattcgctcggc
gaagccgatcttctgcgccgcgccatgggcaagaagatcaaggcggagatggaccagcag
cgcgagcgcttcgtcgacggtgccatcaagaacggcgtgtcgaaggggcaggccgatgtc
atcttcgatctgctcgccaagttcgccaattacggcttcaacaagtcgcacgccgccgcc
tacgccatcgtctcctaccagaccgcctatatgaaggcgcattatccggtggagtttctg
gccgcgtcgatgacgctcgatatgtccaataccgaaaaggtcaatgacttccgtcaggat
gccaagcggctgggcatcgaggttatcgcgccctccgtacagacctcgtttcgccatgtc
gagacgggcgacaaccgcatctattatgcgctggcggccatcaagggcgtcggtgaatcc
gccgtcgaccatatcgtcgaggtgcgcggcgatcagccttttgcctgcatcgaggatttc
tgcctgcgcatcgatcccaagcagatcaaccgccgcgttctggagagcctgatctgcgcc
ggcgctttcgactgcttcgagatcgatcgcgcgcagctgatcggcggcctggaccgcgtc
atgggctatgcccaggtggcacaggaaaataagcgcagcggccagcacgacatgttcgga
agtgccgcctccggcccggaaaagatcgtgttcccgccctatacgccctggctcgcctcg
gagcgtctgctgcgcgaattccaggtgctcggcttctatctgacggcccatccgctcgat
acttacaagagcgtgctcgacaagatgcgggtgcagccctttgccgatttttccgcggcg
gtgaagcagggcgccagcaacgggcgtctcgccggcactgtcatctcgaagcaggagcgc
aagacgcgcaccggcaacaagatgggcatcttcgtcttctcggatgcttcaggacagttc
gaagccgtgcttttctcggagacgctcaaccaatatcgcgatgtgctcgaagtcggcaaa
tccttcgtcattaccgcccaggcggacgagcgccccgaaggtatcagcttgcgcctgcag
acggcgcagtcgctggaggagaagtcgttgcagatgcagaaggcgctgcgcgtctatgtc
cgcgattccggcccgctgaaagccgttgccgcgcatctgaacacgaaaggcgacggcctc
gtttccttcatcgtcatcaaggaagagggcttgcgcgaggtcgaggtggccttgccggaa
aaataccgcatcacgcccgagatcgccgccgcattgcgcacggcgccgggcgtgatcgac
gtggagctggtctga
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