Rhizobium tropici: RTCIAT899_CH07100
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Entry
RTCIAT899_CH07100 CDS
T02432
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rtr
Rhizobium tropici
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtr03032
]
RTCIAT899_CH07100 (topA)
03400 DNA repair and recombination proteins [BR:
rtr03400
]
RTCIAT899_CH07100 (topA)
Enzymes [BR:
rtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
RTCIAT899_CH07100 (topA)
DNA replication proteins [BR:
rtr03032
]
Prokaryotic type
DNA Topoisomerases
RTCIAT899_CH07100 (topA)
DNA repair and recombination proteins [BR:
rtr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
RTCIAT899_CH07100 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
Peptidase_M35
Motif
Other DBs
NCBI-ProteinID:
AGB70823
LinkDB
All DBs
Position
complement(1456576..1459251)
Genome browser
AA seq
891 aa
AA seq
DB search
MMMNVVVVESPAKAKTINKYLGPGYKVLASFGHVRDLPAKDGSVLPDQDFEMLWEVDGAS
QKRIKDIADALKTSDGLILATDPDREGEAISWHVLDVLNKKRVINGKPVKRVVFNAITKK
AVLDAMAEPRDIDVPLVDAYLARRALDYLVGFNLSPVLWRKLPGARSAGRVQSVALRLVC
DRESEIERFISEEYWNLSAILKTPRGDEFEARLVSADGKRLQPRAIGNGEEAGKLKALLE
GASYVVDTVEAKPVKRNPSPPFTTSTLQQAASSKLGFSASRTMQVAQKLYEGVDIGGETV
GLITYMRTDGVQMAPEAIDAARHAIANQFGDRYLPEKARFYSTKAKNAQEAHEAIRPTDF
DRVPDRIRKFLDDDQLRLYDLIWKRGIASQMASAEIERTTVEILADNAGNKAGLRAVGSV
IRFDGFIAAYTDQKEDGEQSDDSEEGGRLPEINARENLAKQKINSTQHFTEPPPRYSEAS
LIKKMEELGIGRPSTYAATLATLRDRDYVTIDKRKLVPQAKGRLVTAFLESFFTKYVEYD
FTADLEEKLDRISAGELNWKDVLRDFWRDFFAQIEDTKELRVTNVLDALNDALAPLVFPK
REDGSDPRICQVCGTGNLSLKLGKYGAFVGCSNYPECNYTRQLSSEGGAEAESNGLNEPK
ALGTDPVTGEELTLRSGRFGPYIQRGDGKDAKRASLPRGWKPEDIDYEKAMALISLPRDI
GKHPETGKMISSGIGRYGPFLLHDGSYANLESVEDVFTVGLNRAVTVLAEKQSKAGGGAR
GGTPAALKDLGAHPDGGGSITVRDGKYGPYVNWGKVNATLPKGTDPQAITVEEAVALIAA
KAGKSGGTTKKAPAKAKAAAAGAKATKTTAKPKAAAKKPAAKTAAKKKSAE
NT seq
2676 nt
NT seq
+upstream
nt +downstream
nt
ttgatgatgaacgttgtagtggtggaatcgcctgccaaggccaagacaatcaataaatat
ctgggacccggatataaggttcttgcatccttcggccatgtgcgtgacctgccagccaaa
gacggttcggtgctaccggaccaggatttcgaaatgctgtgggaagtcgatggtgcctcg
caaaagcgcatcaaggacatcgccgacgcgctcaaaacctccgacggcctgattctcgcg
accgacccggatcgtgagggtgaagccatttcctggcatgtgctcgacgtgctgaacaag
aagcgcgtcatcaacggcaagccggtgaagcgcgtcgtcttcaacgccatcacgaaaaag
gccgtgctcgacgcaatggccgagccacgcgacatcgacgtgccgctggtggacgcctat
ctcgcccgccgcgcgcttgactatctcgtcggcttcaacctgtcgccggttctgtggcgc
aagctgccgggcgcgcgctcggccgggcgcgtgcaatccgtggcccttcgcctcgtctgc
gaccgcgagtccgagatcgagcgcttcatctcggaagaatactggaatctctcggcaatc
ctgaagacgccgcgcggcgacgaattcgaagcccgcctcgtatccgctgatggcaagcgc
ctccagccgcgcgcgatcggcaatggcgaagaggccggcaagctaaaggcgctgctcgaa
ggcgcttcctatgtcgtcgacaccgtcgaggcgaagccggtcaagcgcaatccgagccca
cccttcaccacctcgacgctgcagcaggccgcttcctcgaagctcggcttctcggcctcg
cgcaccatgcaggtggcgcagaagctctatgaaggcgtcgatatcggcggcgaaaccgtc
ggtctcatcacctatatgcgtacggacggcgtgcagatggcgccggaagcgatcgatgcg
gcacgccacgccatcgccaaccagttcggcgaccgctacctgccggaaaaggcacgcttc
tattccaccaaggcaaagaatgcccaggaagcacacgaagcgatccgcccgaccgatttt
gaccgcgtgccggaccgcatccgcaagttcctcgatgacgaccagctcaggctttacgat
ctgatttggaagcgcggtatcgccagccagatggcatcggcagaaatcgagcgtacgacg
gtcgagatcctggccgataacgcgggcaacaaggcgggcctgcgcgccgtaggctccgtc
atccgtttcgacggcttcatcgctgcctatactgaccagaaggaagacggcgagcagagc
gacgacagcgaagaaggcggtcgtctgcccgagatcaacgcgcgggaaaatctcgccaag
cagaagatcaattcgacccagcatttcaccgaaccgccgccgcgctattctgaggcgtcg
ctgatcaagaagatggaagagctcggcattggccgcccctccacctatgcggcgacgctc
gcaacgctgcgcgaccgcgattacgtgaccatcgacaagcgcaagctggtgccacaggcc
aagggacggctggttacagccttcctcgaaagcttcttcaccaagtatgtggagtatgat
ttcacagccgatctggaagagaagctcgaccgcatttcggccggcgagctgaactggaag
gacgtgctgcgcgacttctggcgtgatttcttcgcccagatcgaagacacgaaggaactg
cgcgtcaccaatgttctcgatgctctgaacgatgcgctggcaccgcttgtcttcccgaag
cgcgaagacggcagcgatccgcgcatctgccaggtgtgcggcacgggcaatctctcgctg
aaactcggcaaatacggtgccttcgtcggctgctcgaactatccggagtgcaattatacc
cgccagctttcgtcggaaggcggcgcggaggccgaatccaacggattgaatgagccgaaa
gcgctcggcaccgatccggtgaccggtgaagagctgacgctgcgttcgggccgcttcggt
ccctatatccagcgcggcgacggcaaggatgccaagcgtgcatcgctgccgcgcggctgg
aagccggaggatatcgattatgaaaaggcgatggcgctgatctcgctgccacgcgacatc
ggcaagcaccccgaaaccggcaagatgatttcttccggcatcggccgctatggaccgttc
ctgttgcacgacggcagctatgccaaccttgaaagcgtcgaggatgtcttcaccgttggt
ctgaaccgcgccgtcaccgttcttgccgaaaagcagagcaaggcaggcggtggagcgcgc
ggcgggacgcccgcagcgttgaaggatctcggcgcgcatccggatggcggcggctcgatc
accgttcgcgacggcaagtatggcccctacgtcaattggggcaaggtcaacgcaaccctg
ccgaagggcacggatccgcaggccatcaccgtcgaggaagccgtggctctgatcgcagcg
aaggccggcaagagcggcggcaccaccaagaaggcgcccgccaaggcaaaggccgcggca
gccggcgcaaaagccacgaaaacgactgccaagccgaaggctgctgcaaagaagccagcg
gccaagacggcagcgaaaaagaagagtgcagagtga
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