Rhizobium tropici: RTCIAT899_CH07380
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Entry
RTCIAT899_CH07380 CDS
T02432
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rtr
Rhizobium tropici
Pathway
rtr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
RTCIAT899_CH07380 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtr03021
]
RTCIAT899_CH07380 (rpoC)
03400 DNA repair and recombination proteins [BR:
rtr03400
]
RTCIAT899_CH07380 (rpoC)
Enzymes [BR:
rtr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
RTCIAT899_CH07380 (rpoC)
Transcription machinery [BR:
rtr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
RTCIAT899_CH07380 (rpoC)
DNA repair and recombination proteins [BR:
rtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
RTCIAT899_CH07380 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RPOC_hybrid
Apocytochr_F_C
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
AGB70875
LinkDB
All DBs
Position
1511301..1515509
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHQLLSEEEYMLAVDEYGEDQFTA
MIGAEAIYEMLASMNLEKIAGDLRSELADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPTLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSILNQNEPGEGMAFSDLGELHHALE
NKVVTLHSKIRGRFKSIGEDGKPYSKIYETTPGRLLIGELLPKHGKVTFDICNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDTKVKIVGDTEAL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDEKTGRQKPMNSIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTENGLTMTAIVDAGQVVASLGARILGRT
ALDDIDHPVTGERIVDAGKMILEPDVIEIEKAGIQSIRIRSALTCEIQTGVCSVCYGRDL
ARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTVQIKNRN
MLRNSDGNLVAMGRNMTVQILDERGVERSSQRVAYGSKLYVDDGDKVKRGQRLAEWDPYT
RPMMTEVAGTVHFEDVVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIVIKDASG
NIAKLSRGGEARFLLSVDAILSVEPGTKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAIIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQEGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSQYIVGDNVDRIELDDNNDRLIEEGKKPAYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDELILEERRK
GTDAGVATPMLQDLASENSPAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcgcagaatttcgattcc
atccggatttcgattgcgtcgccggagaagattctttcctggtcttatggcgagatcaag
aagccggaaacgatcaactatcgtacgttcaagccggaacgcgatggtcttttctgcgca
cgaatcttcggaccgatcaaggactacgaatgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtcacgctgtcgcgcgttcgccgc
gagcgcatgggccatatcgagctcgccgctcccgttgcccacatctggttcctgaagtcg
ctgccttcgcgcatttcgacgctgctcgacatgacgctgaaggatgtggagcgcgtgctc
tacttcgaaaactacatcgtcaccgagccgggcctgactgctctcaaggagcaccagctg
ctctccgaagaagagtacatgctcgccgtcgacgagtatggcgaagaccagttcaccgcc
atgatcggcgctgaagcgatctacgagatgctggccagcatgaacctcgaaaagatcgcc
ggcgacctgcgctccgagcttgccgacacgacgtcggatctcaagcagaagaagctgatg
aagcgcctgaagatcgttgagaacttcatggagtcgggcaaccgtccggaatggatgatc
atgaaggtcgtcccggtcatcccgccggacctgcgcccgctggttccgctcgatggcggc
cgcttcgcgacctcggatctgaacgatctgtatcgccgcgtcatcaaccgtaacaaccgt
ctgaagcgcctcatcgaactgcgcgctccgggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatctgtcgatgcgctgttcgacaacggccgtcgtggccgcgtcatcaccggc
gccaacaagcgtccgttgaagtcgctgtccgacatgctcaagggcaagcagggccgcttc
cgtcagaacctgctcggcaagcgcgtcgactattccggccgttcggtcatcgtgaccggt
ccggaactgaagctgcaccagtgcggtctcccgaagaagatggcgctcgagctgttcaag
ccgttcatctatgcccgcctcgacgcgaagggttattcctcgaccgtcaagcaggccaag
aagctggtcgaaaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
catccggttctcctgaaccgcgcaccgacgctgcaccgcctgggcatccaggccttcgaa
cccacgctggtcgaaggcaaggccattcagctgcacccgctcgtctgcacggccttcaac
gccgacttcgacggtgatcagatggccgttcacgtgccgctctcgctggaagcccagctg
gaagcccgcgtgctgatgatgtcgaccaacaacattctgcacccggcaaacggcgcgccg
atcatcgttccctcgcaggacatggttctcggcctgtactatctgtcgatcctgaaccag
aatgaaccgggcgaaggcatggccttctcggatctcggcgagctgcatcacgcgcttgaa
aacaaggtcgtgacgctgcactcgaagatccgtggccgcttcaagtcgatcggcgaagat
ggcaagccctattcgaagatctatgaaacgacccccggccgtctgctgatcggcgaactc
ctgccgaagcatggcaaggtgaccttcgacatctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgccattgcggccagaaggacacggtcattttc
tgcgaccgcatcatgcagcttggcttctcccatgcctgccgcgccggcatttcgttcggt
aaggacgacatggtcattccggataccaaggttaagatcgtcggcgataccgaagcgctg
gtgaaggaatacgagcagcagtacaacgacggtctcatcacccagggcgaaaagtacaac
aaggttgtcgatgcctggggtaaggccacggagaaggtcgccgaagaaatgatggcccgc
attaaggccgttgaattcgacgagaagaccggtcgtcagaagccgatgaactcgatctac
atgatgagccactctggtgcccgtggttcgccgaaccagatgcgccagctgggcggcatg
cgcggcctcatggccaagccgtcgggcgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggccttaccgttaacgagtacttcaactcgacgcacggtgcccgtaagggtctg
gccgacaccgccttgaagaccgcgaactccggttacctgacccgtcgtcttgtcgacgtc
gcgcaggattgcatcgtcacgcacgtcgattgcggtaccgagaatggtctcaccatgacc
gccatcgtcgatgccggtcaggtcgtcgcctcgctcggtgcccgcatcctcggccgtacc
gccttggacgacatcgatcatccggtcacgggtgagcgcatcgtcgacgccggcaagatg
atcctggaaccggatgtcatcgagatcgagaaggcaggtatccagtcgatccgtatccgt
tcggccctgacctgcgaaatccagacgggcgtatgctcggtctgctacggtcgtgacctt
gctcgcggtacgcctgtcaacatcggtgaagctgtcggcgtcatcgccgctcagtcgatc
ggtgagccgggcacccagctgaccatgcgtaccttccacttgggcggcacggcgaccgtg
gtcgaccagtcgttcctggaagcttcgtatgaaggcacggttcagatcaagaaccgcaac
atgctgcgcaactccgatggcaacctggttgccatgggccgcaacatgacggtccagatc
ctggacgaacgtggtgtcgaacgctcctcgcagcgcgtcgcctacggctcgaagctgtat
gtcgacgacggcgacaaggtgaagcgcggtcagcgtctggcggagtgggacccctatacc
cgtccgatgatgacggaagtggccggtacggttcacttcgaagatgtcgtcgacggtctc
tcggttctcgaagcgacggacgaatccaccggtatcaccaagcgtcaggttatcgactgg
cgctcgacgccgcgcggctccgatctgaagccggcgatcgtcatcaaggacgccagcggc
aatattgccaagctgtcgcgtggtggcgaagcccgcttccttctctcggtcgacgcgatc
ctgtcggtcgagccgggtacgaaggtgtcgcagggtgacgttctcgcccgttcgccgctg
gaaagcgccaagaccaaggacatcaccggtggtctgccgcgcgttgccgaactgttcgaa
gctcgtcgtccgaaggaccacgccatcatcgcagagatcgatggtacgatccgcctcggc
cgcgactacaagaacaagcgtcgcgtcatcatcgagccggcggaagacggtgtcgagccg
gtcgaatacctgatcccgaagggcaagcccttccaccttcaggaaggcgactatatcgaa
aagggtgattacatcctcgacggtaacccggctccgcacgacatcctggcgatcaagggc
gtggaagctctggcttcctacctggtcaacgaaatccaggaagtctaccgcttgcagggc
gttgtcatcaacgacaagcacatcgaagtgattgtccgtcagatgctgcagaaggtggaa
atcaccgatgcgggcgacagccagtacatcgtcggcgacaacgtcgaccgtatcgagctg
gacgacaacaacgatcgcctgatcgaagaaggcaagaagcctgcttatggcgatccggtt
ctgcttgggatcaccaaggcatcgctacagacgccgtccttcatctcggccgcatccttc
caggaaacgacgaaggtgctcaccgaagctgcaatcgccggcaagaccgacggtctgcag
ggcctgaaggaaaacgtcatcgtcggccgcctcatcccggccggtacgggcggtaccatg
acgcagatccgccgtatcgctacggcccgcgacgagcttatcctcgaagagcgccgcaag
ggcacggatgccggcgtcgcaacgccgatgctgcaggatctcgccagcgagaacagcccg
gctgaataa
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integrated database retrieval system
