Rhizobium tropici: RTCIAT899_CH08080
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Entry
RTCIAT899_CH08080 CDS
T02432
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
rtr
Rhizobium tropici
Pathway
rtr03410
Base excision repair
rtr03430
Mismatch repair
rtr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
RTCIAT899_CH08080 (recJ)
03430 Mismatch repair
RTCIAT899_CH08080 (recJ)
03440 Homologous recombination
RTCIAT899_CH08080 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtr03400
]
RTCIAT899_CH08080 (recJ)
DNA repair and recombination proteins [BR:
rtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
RTCIAT899_CH08080 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
RTCIAT899_CH08080 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RTCIAT899_CH08080 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RecJ_OB
DHH
DHHA1
Motif
Other DBs
NCBI-ProteinID:
AGB71011
LinkDB
All DBs
Position
1646897..1648699
Genome browser
AA seq
600 aa
AA seq
DB search
MEQPVDPVQRAFLGVERSVSGNRWVSRLDQAGQNRALAIAQTHGLPELIARVLAGRGVGQ
DEAMAFLDPTIRGLMPDPHLLTDCEKAAQRLLHAIRKGETVAIFGDYDVDGAASSALLYR
FLAHFGVPASIYIPDRIFEGYGPNPTAINQLIDNGATLIVTVDCGSTSFESLDAARARNV
DVVVIDHHQVAHELPHCHALVNPNREDDLSGQGHLCAAGVVFMVLVAALRLLREAGDSRV
RSIDLLAWLDIVALATVCDVVPLKGLNRAYVVKGLIAARHQGNLGLAALFRKAGLNGPVT
PYHFGFLIGPRINAGGRIGDAALGARLLTLEDGGEAETIAAKLDELNRERQAMEAAMLQE
AEAEALAEYGNGDGASVIVTARENWHPGIVGLIASRLKDKFRRPAFAIAFDPMGKGTGSG
RSINGFDMGRMVRAAVDAGLLVKGGGHAMAAGLTVERSNLGKLRAFFTEKAEKQVAGLVA
NETLKIDGALGASGATVELIDRLETAGPYGSGHPQPVFALPSHRLRDSRLVGQSHIKITL
EAQDGGRVDGIAFRAAETPLGELLLSSRGAQIHVAGTLGADHWQGSRRVQLRITDAAKAP
NT seq
1803 nt
NT seq
+upstream
nt +downstream
nt
gtggagcaaccggtcgatccagttcagcgggcatttctgggtgtcgagcgctcggtatca
ggcaatcgctgggtatccaggctcgatcaggccggccagaacagggcgctcgccattgcg
cagacccatggcctgccggagctgattgcccgcgtgcttgcagggcgcggcgtcgggcag
gacgaagccatggctttcctcgacccgacgatccgcggcctgatgccggacccgcatctg
ctgaccgattgcgagaaggcagcacagcgcctcctgcacgccatcaggaagggcgagaca
gtcgcgatcttcggcgactacgatgtcgatggcgcggcctcctcggcgctgctctatcgc
ttcctcgcccatttcggcgttccggccagcatctatattcccgatcgcatctttgagggt
tacggccccaatcccacagccatcaatcagcttatcgacaatggcgcgacgctgatcgtg
accgtcgattgcggctccaccagcttcgaatcgcttgatgcggcgagggcgcgcaatgtc
gacgtcgtcgttatcgatcaccatcaggtggcgcacgagctgccgcattgtcatgccctg
gtcaatccgaaccgtgaggatgatctgtcggggcaggggcatctctgtgccgccggcgtc
gtcttcatggttctggttgcggcgctgcggctgctgcgcgaggccggcgattcccgcgta
cgctccatcgatctgcttgcctggctcgatattgttgcgcttgcgaccgtctgcgatgtc
gtgccgctgaaaggcctcaaccgtgcctatgtcgtcaaggggctcattgccgcccgccat
cagggcaatctcgggctcgcagcgctgtttcgcaaagcaggtctcaatggtcccgtcaca
ccctatcacttcggcttcctgattggcccgcgcatcaatgccggcggccgcatcggcgat
gccgctcttggcgcacgcctgctgacgctggaggacggcggcgaagcggaaaccatcgcc
gcgaagctcgacgagctcaatcgtgagcggcaggccatggaggccgccatgctgcaggag
gcggaggccgaggcgctggcggagtacggcaatggcgacggcgcctccgtcatcgtcacg
gcgcgcgagaactggcatccggggatcgtcggcctcattgcatcgcgcctcaaggacaaa
ttccgccggccggcttttgccatcgccttcgatccgatgggcaagggtacaggctccggt
cgctccatcaacggcttcgatatgggtcgcatggtgcgcgcggccgtcgatgccggtctg
ctggtcaagggcggcggccatgccatggcggccggcctgacggtggaacggagcaatctc
ggcaagctgcgcgccttctttacggagaaggcggagaaacaggtagccggccttgttgcc
aacgagaccctgaagatcgacggtgcgctcggcgcaagcggcgcgaccgtggagctgatc
gataggctggagacagccggtccctatggctcgggccatccacagcccgtcttcgccctt
ccgagccaccgcctgcgcgattctcgtcttgtcggccagtcgcacatcaagatcacgctc
gaagcacaggatggcggccgagtggatggcatcgccttccgcgcggcggagacgcctttg
ggtgagctgctgctgtcgtcgcgcggtgcacagatccacgtcgctggcacgctcggtgcc
gatcactggcaaggcagccgacgcgtgcagctgcggatcacggatgcggcgaaagctccg
taa
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