Rhizobium tropici: RTCIAT899_PA00230
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Entry
RTCIAT899_PA00230 CDS
T02432
Name
(GenBank) UvrD/REP helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rtr
Rhizobium tropici
Pathway
rtr03420
Nucleotide excision repair
rtr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RTCIAT899_PA00230
03430 Mismatch repair
RTCIAT899_PA00230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rtr03400
]
RTCIAT899_PA00230
Enzymes [BR:
rtr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RTCIAT899_PA00230
DNA repair and recombination proteins [BR:
rtr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RTCIAT899_PA00230
MMR (mismatch excision repair)
Other MMR factors
RTCIAT899_PA00230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
DUF4224
Motif
Other DBs
NCBI-ProteinID:
AGB73148
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All DBs
Position
pRtrCIAT899a:44241..46019
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AA seq
592 aa
AA seq
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MSSSQQLLSAINELSTNPEQVAAVRETGHCVVLAGPGSGKTKTLTTAMARALSDDIIEPR
GVACITYNNECAIELETRLARLGIESGDRAFIGTVHGFALSQVIAPYARCVPIGLPAEFQ
VATRAQTRAAVEAAYATAIGGSDDPHRRWNFASEKRRRDVDRSRPDWLGRNPELAVFIEA
YENELRRQGLIDFDDMPLLAYRMIKEHDWIRDALHARFPVLFVDEYQDLGHALHELVLLL
CFGGGIRLFAVGDSDQSIYGFTGANPELLDSLTQRCDVRTIRLRFNYRSGGKIVRASLGA
LGEERDYREAEGAPEGELTFWPVTLGLDVQAQAIADTVIPDLEKRGFALDEIAVLYRAAY
LGDKIAEALKRAGTPFVRSDGNALVRRSSRLSRFIEDCARWVVGGWKSADPRYSRLLQQA
LKIVYGAQVRPDEEQLLSDQLIGFLQATINSSDTTHTWLQLFDSELIAHWRTIARNAEQE
WEVCAEMIRNTDPVADLDIPLAHLAGRLEGTGRVNLSTLHSAKGREFDAVVMYGVNASDF
PSQRDRQSTVALREARRLFYVGVTRPRRELAMVYQEHHHSPWVKELFDRSQK
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
gtgtccagtagtcagcaactgcttagcgcgatcaacgaattgagcaccaatccggagcaa
gtcgcagctgtgcgcgagacgggccactgcgtcgttctggccggaccaggaagtggcaag
acgaagacgctgacgacagcgatggcccgcgctctgtctgacgacatcattgaacctcgc
ggggttgcttgcatcacctacaacaatgagtgcgcaattgagcttgagacacgccttgcc
cgccttgggatcgaaagtggtgatcgagccttcatcggaaccgtgcatggattcgctctg
agccaggtcatagcgccgtacgcccgatgcgtaccgatcggactgcctgcagagtttcag
gtggcgacccgtgcccagacacgagctgcggtggaggcggcctacgcgaccgcgatcggc
ggtagcgacgaccctcatcgtcgatggaactttgcgtcggaaaagcggcgacgggacgtt
gatcgcagccggccagactggctaggccgcaatccggagctcgccgtgttcattgaggct
tatgagaacgagcttcgacggcaaggcttgatcgatttcgacgatatgccgctcctggcg
tatcgcatgatcaaggagcacgactggatcagagatgcacttcacgcgcgcttccccgtc
ttgttcgtcgacgaatatcaggatctcggccatgcattgcacgagcttgtccttttattg
tgttttggcgggggcattcgcttgtttgcggtcggcgattccgaccaatccatatacggg
ttcactggtgcaaaccccgaactgctcgatagcttgacccaacgctgcgatgtccgcacc
atcagactgcgcttcaactaccggtctggcgggaaaatcgtgcgagcgtcgctcggcgca
ttgggagaggagcgtgattatcgcgaggcagaaggagctccagagggagagttgacattc
tggccggtgacgctcggccttgatgtgcaggcacaagcgattgccgacactgtcattccc
gatctggaaaagagaggcttcgcacttgacgaaatagccgtgctgtatcgcgctgcatat
ctcggggacaagattgccgaagccttgaagcgggccggcacgccctttgtacgcagcgac
ggaaacgcactggtcaggcggagttcgcgactttcccggtttatcgaggattgcgcgcgt
tgggtcgttggtggctggaaaagtgctgacccgcggtatagccgcctgcttcagcaagcg
ttgaagatcgtctacggcgctcaagttaggcctgacgaagaacaacttctttcggatcag
ctcatcggctttctccaagctacgatcaactccagcgacaccacccacacctggctacaa
cttttcgacagcgagcttattgcacattggcggacgattgcgcgaaacgcagagcaagaa
tgggaggtctgtgccgagatgatccgcaatactgaccctgtggccgacctcgatatcccg
ctcgcccatctcgccggccgtttagagggaaccggtcgcgtgaacctgagcacgctgcat
agtgcgaagggcagggagtttgatgccgtcgtcatgtatggcgtgaatgcaagcgatttt
cccagtcaacgcgatcggcagagtaccgttgcgctccgtgaagcgcgccgtcttttctac
gttggcgtgacgcgcccacggcgggaacttgcaatggtctatcaagagcaccatcactca
ccttgggtgaaggagctcttcgacagaagtcaaaaatag
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