Rhizobium tropici: RTCIAT899_PC00125
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Entry
RTCIAT899_PC00125 CDS
T02432
Name
(GenBank) hypothetical protein
KO
K20276
large repetitive protein
Organism
rtr
Rhizobium tropici
Pathway
rtr02024
Quorum sensing
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
RTCIAT899_PC00125
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OmpA
GntP_permease
Motif
Other DBs
NCBI-ProteinID:
AGB73839
LinkDB
All DBs
Position
pRtrCIAT899c:complement(28803..36068)
Genome browser
AA seq
2421 aa
AA seq
DB search
MATLALLDMVSPYVVGGAAIGQPLHELLSALFVTEIETAFDDNGICLSGIARFSANVGNA
LPTFTPPFTITWNPNATVDHRTQRTQGAYWDFPDIAITFQLNAPRISSPIADLVVSGGPG
GNPAALNNGPLAALLAGLGQGQPAPGQTAADSVDTVFHLDLLFDAATLHLPFLTGALLQP
DGILVPDPQNPEVTLVLPKIKLSIDQTAGATTGGGSDPQVSINFDSWAAFDINDPAGAGY
GDLLRMQPPYAFFGPDDVLGFGFNSLLLDLSGTETPPAILEKFGVGDDFRGFYAPDVRVF
IQPPAFKGLGVDVSARELLFQFGSDGGLSAIFGLDVVKPDAAQGATITIYDEFGGLVDKI
ALPDVAAPPAPPFTSEIVPVPRKSQWVVDVTGGQPPYNINIDGKTQTTDPIVVQLAPNQT
SHTVGIDILDVHVGPQPRHADVRVALLPPSLTAPEGGFNRTSEKAVLTVVNAGPPGYAIG
MLDFPEQEKLTIVFAPETAIATFSTAGGPPQALPITAGRASVSLPHGSSVDISATWNIAA
QPPSPVTFHGQFQYDQPLRSSATPETVDDPTWAAFASNPENIRTIPSADTANPNQQNWQG
VDNELVTSSDFNAFVAAAKAEPDTPITLAGEASKEKVPVIEYNVALSQRRIWAIRRLLTA
QGVTNQIIELPEGEQPPTDPYLAPGRGAYRRVLASIPTGARPATTATAAVQIARPARKPV
PAPFKPPVIRREAPGNDSIRFKELHVRVELDHNRLIAIEIRLKVDVTTVLESYLTTVQQQ
NPIPQGQGPISLPVGKAADPNDGVLDMRLQLTLDDTVGRWQMLASLFEQDSDGFLQTPPP
AALAAGPVADYFWRDYFGLLVALAPLLDAVATSNTPAGDLVALGIGAGVPLAAAKLDIVH
VPRITFYGGELVVAHDPHGTQGALLLDVEVALVVTLNLAGRQLINTDPTNPITVRYKAVG
FKTSDTPQIRDIIPVFDSSKGFTINIPSTGSIRVPPPLGDILQVSGARIARSNPANLELD
LGLKVDLGVVTVDKTTIRIPLEGGQPPTITALGVHINISGAIEGGGYLAIYPDGFAGQLD
VSLPGLGVRVAAGLSVRHVPTPPAPGPQATAILLTLEVDFPVPIALGNSGLGIFGFGGLF
ALHFRRDEHPNDPIPALDWLTRVNGNPMEITGWVPDIDRWAIGLGAVLGTMDAGFTLNVK
GMLIFEMPGPRILLVMKAKIIAIRPPREGNPTATILAVIDIDLGRRRITIGLTFDYEIKP
LLAVHIPTRAIFPFDDLAHFAIDVGSWYNPATVTFFDLFKARGYFMIRGKGIPDSSASPD
NYDEGHDSTFPLLPLRLGGFSIATGVSVSFTWGDVDDGLYLSVGAAADAGLGFAPILFTG
EIRLWGELHLWVVSIEAAAKLTVVAGQVPDGPTVPDPDYPGDPTHLYQPTKNVVQIDGEV
HGEVDLFFFTVSGSVHVTLGSRPDDPPAPPPLVNGVSLQSRAAALLAGVSSDRPIDGKLV
DAHADGSAIPDGEVVPIDAIIVLHFDCTPRIDGAFSATQLDPNDAGRTITTSIAIGPIGP
SSPAVHRGTPYYTYRLKGISMDHALTPGEVPAVWWPNVPDPTAESKRELALLTRIPDAHP
SAVERSRHAEDFLRQHWATICDEVAPATSVLWTFHDQPLGPSSIGWQIFGTAWPDPPQST
RQAPPKLRLDIAENWRSGNPVADLLVDVAPARVIGGYVACPDGCTAAGAVARQRPDTHLA
QAAMSQRPRFTTIRDFAAVTSSSDQRASLAWLLPGFADATRQRASRGCYAKLLEAPFQRP
KAPDLQSGYPLAEIINELLAEASRGDDYSDVLTLATGQIVTLRVLIFAPDQLVRSGRLQM
RCFDADGNQLDAVKITADGNGSLRIQTQNDLPKPWINLKGPWACRVIEVFNFLSTANRKE
DGAIILVDTKTPDGTAYVQFGIVDLLSIIDEGFNRPSYLVGVIETLTAAEVARETDETLI
QNHKKSEINGALAPMTAPPALLLPNTEYAVSVEWEWATCNADGSDAKTWNAAPIQTFRFR
TDNQPLAPRVIASPSDRQDQAKTMPVRLDPWVITTDPDEGERFYFHSLPIRIVFAVDYLL
TMFKTYGVELQAKVRAASYKNAAPTSPGFPHTFAVIKDAVTAVAADQVNTRPLVGVSVLS
PWEGMIRDVLANAPCIPTSGAVTRHTIVDINLLLEPSTDFVLDIEPVNAPPPPPGKLMTP
LFRRAFTTSRYANPAAMCADVSVSKPVEFPASAADIAALLALLNAPQLSRSQIDAALGEA
GLRPVVEVKSPEIEVLWVPDGGALQPRLIVIRTPEPLVRTRKEPQNYEPPGQPRLQREVI
SLVDKPYLEVVPAVGVGGAAPLHIISQPGLNIVIAAVDAGRNKPIAFSLRVHENPFLGEG
SGTSDIDLLKMILDAAIWEVA
NT seq
7266 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgttggcgttgctcgatatggtcagtccttatgtcgtcggcggtgcggccatt
ggccaaccgctgcacgaactgctgagcgcgctattcgttaccgaaatagagacagccttc
gacgacaacggaatctgccttagcgggattgcccgtttcagcgccaacgttggcaatgca
ttgcccactttcacaccgccctttaccatcacttggaaccccaacgcgacagtcgaccat
cgtacgcagcgcacgcagggcgcatattgggattttcccgacatcgcgatcaccttccag
ctgaacgccccccgcatttcttcacccattgccgacctcgtcgtttccggcggccccggc
ggcaatccggcagcgctcaacaacggcccgcttgccgcgcttctggcagggcttggccag
ggccaacccgcgccgggtcagaccgcagcggattctgtcgatacggtctttcatctcgat
ctgctgttcgatgctgcaacactgcatctgccgtttctcacaggcgccttgttgcagccg
gacggcatactcgtccctgacccgcaaaatcccgaagtcacgctcgttctgccaaaaata
aagctatcgatcgaccaaactgccggagcgaccacgggtggtggcagcgatccgcaggta
tcgatcaacttcgattcctgggccgctttcgatatcaacgatccggctggtgccggctac
ggcgatctattgcgcatgcagccgccctacgccttcttcggccccgacgatgttctcggc
ttcggcttcaacagcctgctgctcgatctctcgggcaccgagacgccaccagcgatcctc
gaaaagttcggtgtcggcgatgatttccgcggcttctatgctcccgatgtgcgggtcttc
atccagccgccggcgttcaaaggccttggtgtcgacgtttcagcgcgggaactgctgttc
cagttcggcagcgacggtggcctgtccgcaatctttggcctcgatgtcgtcaagccggac
gcagcgcaaggggcgacgatcaccatctacgacgagttcggcggactggtcgacaagatc
gccctgcctgacgtcgcggcgcctccagctccgcctttcacatccgagatcgtaccggtt
ccgcggaagtcgcaatgggtggtcgacgtcacgggcgggcagccgccttacaacatcaat
atcgacggtaagacgcagaccaccgaccccatcgtcgtccagttggcccccaatcagacg
agccacactgtcggcatcgacatcctcgatgtgcacgtagggccgcagccgcgccatgcc
gatgtgcgcgtggctctactaccgccatcgctgaccgctccggagggtggcttcaatcgc
acttccgaaaaggccgtgctgaccgtcgtcaacgcaggtcctcccggctatgccatcggc
atgctggatttccccgagcaggaaaagctcactatcgtctttgcgccggagacggcgatt
gcgacattttcaaccgctgggggaccaccgcaggctttgccgatcactgctggccgcgct
tccgtgtcgttgccgcacggctcctcggtggacatcagcgccacctggaatatcgcggcc
caaccgccgagcccggtcaccttccacggccagttccaatacgatcaacctctccgctcg
tctgcgacgccggagacggtcgacgatccgacctgggcagccttcgccagcaatccggag
aatatccggacgattccctcggcggataccgccaatcccaaccagcagaattggcagggt
gtggacaacgagctcgtgaccagttcggacttcaacgccttcgtggccgccgccaaggca
gaaccggatacacctatcaccctcgctggggaggccagcaaggagaaggtcccggtcatc
gaatacaacgtcgcgctgtcgcagcgccgcatctgggcgatccgtaggctgcttacagcg
caaggtgtcaccaaccagatcatcgagctgcccgagggcgagcagccccctaccgatcct
taccttgctcccgggcgcggcgcctatcgccgcgtcctcgccagcatcccgaccggcgct
cggccggcgaccaccgcaacggccgctgtgcagattgcccggcctgcccgtaagcctgtg
ccggctcccttcaaaccaccagtcattaggcgcgaagcgccaggcaacgacagcatccgc
ttcaaggagctgcatgtccgcgtcgaactcgaccacaatcgcctgattgccatcgagatc
cgtctcaaggtcgacgtcaccacggttctcgagagctacctgaccaccgtccagcagcag
aatccgatacctcagggtcagggaccgatctcgctgccagtcggcaaggcggccgatccc
aatgacggcgtgctcgacatgcggcttcagcttaccctcgacgacaccgtcgggcgatgg
cagatgctggcgagcctcttcgagcaagacagcgatggattcctgcagacgccgccgccc
gccgcgctcgccgccggccccgtggccgattacttctggcgcgactatttcgggctgctg
gttgccctcgcgccgctgctcgacgctgtcgcaacctccaacacgccggccggcgacctt
gtcgcgctggggattggagctggtgtcccgctcgccgcggcgaaacttgatatcgtgcac
gtaccacgcatcaccttctacggcggagagctggtcgtcgcacatgatccccatggcacg
cagggcgcgctgctgctggacgtagaggtggccctcgtcgtcacactgaacctcgccggc
aggcagctcatcaacaccgaccccacgaatcccattaccgtccgctacaaagctgtgggg
ttcaaaacctccgacacgccgcaaatccgcgacattatcccggtcttcgactcctcgaag
ggatttaccatcaatatcccgagcacaggcagcatcagggtgcccccgccgctcggcgac
atcctgcaagtatccggcgcgcgtatcgctcgctcaaacccggccaatctggagctcgac
ctcggcctcaaggtcgatctgggcgtcgtcaccgtcgacaagacgaccatccgcatcccg
ctcgaaggcgggcagccgccgacgatcacagcgcttggcgtccacatcaacatcagcggc
gccatcgagggcggtggatatcttgcgatctatcccgatggcttcgccggccagctcgat
gtctctttgcccggtctcggcgtccgcgttgcggcagggctctcagtccgccacgtgccg
acgccgcccgcgccggggccgcaggccaccgcaatccttctgacactcgaggtcgatttc
ccggtaccgattgccctcggcaattcggggctcgggattttcggctttggcggtctcttc
gcactgcatttccgccgcgacgagcatcctaacgatcccattccggcactcgactggcta
acgcgcgtcaacggcaatccgatggagatcaccggctgggtgccggacatcgatcgttgg
gctatcggccttggcgccgtgctcggaacgatggacgccggctttacgctcaacgtcaag
ggcatgctcatcttcgagatgcctgggccacgcatccttctcgtcatgaaggccaagatc
attgcaatccggccgccacgagaaggcaatccgactgcgacgatcctcgcggtcatcgac
atcgacctcgggcggcgccggatcaccatcgggcttactttcgactacgaaatcaagcct
ctgcttgctgtccacataccgacgcgcgccatctttcccttcgatgacctagcgcatttc
gcgatcgacgtgggctcctggtacaacccggcaacggtcactttcttcgatctcttcaag
gctcgcggctatttcatgatccgcggcaagggcatacccgacagttcggcctctcccgac
aactacgatgaaggccacgacagtaccttcccgttgctacccttgcggctcggcggtttc
tctatcgcgacgggtgtttccgtctcgttcacctggggcgacgtggatgatgggctctat
ctttcggtcggcgccgctgccgatgccggcctcggttttgcaccgatcctctttaccggc
gagatcagactatggggagagctgcatctctgggtagtgagcatcgaggcagcggccaag
ctcacggtcgtcgcgggacaggtgcccgacggcccgacggtgcccgatccggactatccc
ggtgatcccacccatctctatcagccgacaaagaacgtcgttcagatcgacggtgaagtg
catggcgaagttgacctgttcttcttcaccgtatcgggttccgtgcacgtgacactgggc
tcccgtcccgacgatccaccggccccgccgccgctcgttaatggcgtcagcctgcagtcg
cgggcggcggcgctgctggccggtgtcagcagcgaccgtccgatcgatggcaagcttgtc
gacgcacacgccgacggcagcgccatccccgacggcgaagtcgtgccgatcgacgcgatc
atcgtgctgcacttcgactgcacgccccgcatcgacggcgccttctcggcgacgcagctc
gaccctaacgatgccgggaggaccatcacgaccagtatcgcgatcggtcccatcggtcca
tcctcgcccgcggtgcatcgtgggacgccctactatacataccgtctcaaaggcatttcc
atggaccacgcgctaacccccggcgaggttcctgctgtctggtggccgaacgttcccgac
cccaccgccgagagcaagcgcgagctcgcactgctgacgcgcatacctgatgcgcacccc
agcgccgtcgaacgcagccgccacgcggaggattttctccgccaacattgggcgacgatc
tgcgacgaggtcgcgcctgccacatcggtgctctggacgttccacgaccagccactcgga
ccgtcgagcatcggctggcagatattcggcaccgcctggcccgatccaccgcaatcgacg
cgccaggctccacccaagcttcgtctggatatcgccgagaactggcgttccggcaatcca
gtcgccgatctcttggttgatgttgcgcctgcccgagtgatcggaggatatgtcgcatgc
cctgacggctgcacggctgccggcgccgtggcacggcagcgccccgacacccacctggca
caggccgccatgtcccaacgcccaaggttcaccacaatccgcgatttcgccgccgtaacg
agctcgtcggaccagcgggccagcttggcgtggctcctgcccggatttgccgatgcgaca
cgacagcgggcttctcgcggctgctacgccaagttgctcgaagcaccgttccagcggccg
aaggcgccggaccttcagagcggctatccactcgccgagatcatcaacgagctgctcgcg
gaagccagccggggtgacgactactcggacgttctgacgcttgcaactggtcaaatcgtg
acgcttcgagtgctgatcttcgcgcccgaccagctcgtgcggagcggccgccttcagatg
cgatgcttcgatgccgatggcaaccagctcgacgcggtcaagatcacggcagacggcaac
ggcagcctccgcatccagacacagaacgatctgccaaaaccatggatcaatcttaaagga
ccctgggcttgccgcgttatcgaggtcttcaatttcctctcaaccgccaatcgaaaagag
gacggcgccatcattctcgtcgatacgaagaccccggacggaaccgcctatgtccagttc
ggcatcgtcgacctgctaagcatcatcgacgagggctttaaccgcccctcctatctcgtc
ggcgtcattgagacgctgaccgcagccgaggtagcacgcgaaaccgacgagacgctgatc
cagaatcacaaaaagagcgagatcaatggcgcgctcgcgcccatgacggcaccgcccgcg
ctccttctgcccaataccgaatacgcggtttcggtcgagtgggaatgggcaacatgcaac
gccgacggatcggatgcgaagacgtggaacgccgccccgatccagaccttccgcttccgc
accgataaccaaccattggcgccccgcgtcatcgcctcacccagtgaccggcaggaccag
gcgaagacgatgccggtcaggctcgacccatgggtcatcacgacggaccccgatgaaggc
gagcggttctattttcacagcctgccgatccgaatcgtcttcgccgtcgattatctgctg
acgatgttcaagacttacggagttgagctgcaggccaaggtccgcgctgcctcctacaag
aacgccgcgcccacctcgcctgggttcccccacacctttgccgtgatcaaggacgccgtc
accgcggtggcagccgatcaggtcaatacccgaccgctcgttggcgtgtcggtgctgtct
ccgtgggagggcatgatccgtgatgtcttggccaacgcgccttgcatccccacgtcaggg
gccgtcacgcgtcacaccatcgtcgacatcaacctgctgctcgagccgagcaccgatttc
gtcctcgacatcgaaccggtcaatgcgccgccgcctccacctggcaagctcatgacgccg
ctcttccgacgtgcctttaccacctcgcgttacgccaatccggcggccatgtgcgccgac
gtctctgtgagcaagccggtcgagtttccggccagcgccgcagatatcgcggcactcctg
gccttgctcaacgcgcctcaactgtcgcggtcgcagatcgatgcggcgctcggcgaggca
ggcctgcggcctgtcgtcgaagtaaagagccccgagatcgaggtattgtgggtgcctgat
ggtggtgcactgcagccccggctcatcgtcatccgcacccctgagccgctggtgcgcacc
cgcaaggaaccgcagaactacgagccgcctgggcagccgcggctgcagcgcgaggtaatc
agcctcgtcgacaagccctacctcgaggtggtcccggcggtaggcgtcggcggcgcagcg
ccgcttcacatcatcagccagcccggcctcaacattgtcatcgccgcggttgacgcggga
cgcaacaagccgatcgcattctcgctcagagtgcatgaaaacccgtttctcggcgagggt
agcggcacgtcggatatcgacctgctcaagatgatcctcgatgccgcaatctgggaggta
gcgtaa
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integrated database retrieval system
