Rhizobium tropici: RTCIAT899_PC01140
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Entry
RTCIAT899_PC01140 CDS
T02432
Name
(GenBank) putative lysine/ornithine decarboxylase
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
rtr
Rhizobium tropici
Pathway
rtr00300
Lysine biosynthesis
rtr00470
D-Amino acid metabolism
rtr01100
Metabolic pathways
rtr01110
Biosynthesis of secondary metabolites
rtr01120
Microbial metabolism in diverse environments
rtr01230
Biosynthesis of amino acids
Module
rtr_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
RTCIAT899_PC01140
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
RTCIAT899_PC01140
Enzymes [BR:
rtr01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
RTCIAT899_PC01140
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Ala_racemase_N
Orn_DAP_Arg_deC
Motif
Other DBs
NCBI-ProteinID:
AGB74033
LinkDB
All DBs
Position
pRtrCIAT899c:241344..242705
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AA seq
453 aa
AA seq
DB search
MTAHIIPITGAELSPLLSPLAADILTARAPLLHKWIEEHGSPLHLVLPSELKANVDALRH
VLDGRGVGHAIYYGSKVNKSSGLMQAALRAGSGIDVSSVYELRDAVKLGAQGHDIVATGP
AKTAQFHDELVRIQALVSVDSPEELADISSRLPPEAKQPVLLRLQPKGHEKSRFGMAADT
VRACLSRIAADNRFRFDGIHFHLGGYRWQDRAVAFEEAVRLIEEARTIGFSPAMIDIGGG
LPVQYVSEAAWEEYLQRQSADDYRTGKVPASFYPYGGPQSAAAWLRCFLGALLSSGQTIE
DYLKQHKLTLAMEPGRSLVDQAAISAFGITRVKDLGGGNGVIFVEGSSFSACETWFASEF
MMDPILIRQNNQAPAGEAFRAYIAGHSCLDEDVLSNRWLSFPHAPEAGDVLVWANTGGYQ
MDLLENEFHRHPMPKRMCVTKSAAGELSIYPDN
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgaccgctcacatcatcccgatcacgggggcggagttgtctccgttgctctctcctctt
gccgctgacattttgacagcgagggcgccgctcctgcacaaatggatcgaagagcacggg
tctccgcttcacctcgtgcttccgtcggagctcaaggcaaatgtcgatgccctgcgccac
gttctcgacggtcggggagttggacacgcgatctattatggttcgaaagtcaataaatcc
tccggcctgatgcaagccgcgctcagggcaggctcaggcatcgacgtgtcgagcgtttac
gagcttcgcgatgctgtcaaacttggggctcaaggtcacgatattgtggcgaccggtccc
gcaaaaacggcgcaatttcacgacgaactcgtccgcatccaggctcttgtctccgtggac
agtccggaggagctggccgacatatcgagccggttgccgccagaggccaagcaacctgtc
cttttgcgactacagccgaaaggtcatgagaaaagccgctttggcatggctgccgacacg
gtgcgagcatgcctctcacgcatcgctgccgataatcgcttccggttcgacggcatacat
ttccatttgggcggatatcgctggcaggatcgggcggtagcgtttgaggaggctgtcagg
ctgatcgaggaggcccggacgatcggattttctccggcaatgatcgatatcggcggcgga
ttgccggtgcaatatgtgtccgaggcggcatgggaagagtatctgcagcgccaaagcgcg
gacgattaccggacgggcaaagttccggcttccttttatccctatggcggtccccaatcg
gcggcggcgtggcttcgttgttttttgggcgctttgctgtcgtcgggccagacgatcgaa
gactatctgaaacaacacaagctaacgctcgcgatggagccggggcgctctcttgtcgac
caggcggcgatttcagctttcggcataactcgtgtgaaggatcttggaggcggaaatggc
gtgattttcgtcgaaggcagtagtttcagcgcctgcgagacctggtttgcttccgaattc
atgatggatcccatcctcatacgccagaacaaccaggctcccgcaggggaggccttccgg
gcttacatcgccggtcatagctgcctcgacgaagacgtcctgagcaatcgctggcttagc
tttccccatgctcccgaggccggagacgttctcgtctgggccaatacgggcggctatcag
atggatctcctggaaaatgagtttcatcggcacccgatgcctaagcggatgtgcgtaaca
aagagcgcagccggcgaactatcgatctatcccgataactag
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