Rhizobium tropici: RTCIAT899_PC09200
Help
Entry
RTCIAT899_PC09200 CDS
T02432
Name
(GenBank) ornithine decarboxylase
KO
K01581
ornithine decarboxylase [EC:
4.1.1.17
]
Organism
rtr
Rhizobium tropici
Pathway
rtr00330
Arginine and proline metabolism
rtr00480
Glutathione metabolism
rtr01100
Metabolic pathways
rtr01110
Biosynthesis of secondary metabolites
rtr04148
Efferocytosis
Module
rtr_M00134
Polyamine biosynthesis, arginine => ornithine => putrescine
Brite
KEGG Orthology (KO) [BR:
rtr00001
]
09100 Metabolism
09105 Amino acid metabolism
00330 Arginine and proline metabolism
RTCIAT899_PC09200
09106 Metabolism of other amino acids
00480 Glutathione metabolism
RTCIAT899_PC09200
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
RTCIAT899_PC09200
Enzymes [BR:
rtr01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.17 ornithine decarboxylase
RTCIAT899_PC09200
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OKR_DC_1
OKR_DC_1_C
OKR_DC_1_N
Beta_elim_lyase
NUP50
Motif
Other DBs
NCBI-ProteinID:
AGB75627
LinkDB
All DBs
Position
pRtrCIAT899c:1977666..1980023
Genome browser
AA seq
785 aa
AA seq
DB search
MDYFRRFNFLFATPTFDNEDLEGARYIQIVEEIERSGFEVVRARNLEDAEIAVQTDAAIG
CMLVDWGKKGLEGKTASLINLMRRRGLEFPIILLIRRKRFEDVPVEVLDFIDGYVFLSEE
TPAFIAKSLISRLKQYAETLKTPFFGALVDYAEEGNHLWTCPGHNGGIFYSRSPIGRVFM
EHLGEAVFRDDLDNSVLDLGDLLTHEGPALAAQKEAAKIFGAEKTYFVLNGTSTSNKVAL
SALVTDGDLVLFDRNNHKAAHHGALMISGGIPLYLPTARNLYGLIGPMDFATMDEDALRE
RIRTHPLVKDPEAYKKPRPFRVAVVEQCTYDGTIHNAEMILKRIGHLCDYILFDEAWAGF
MKFHPLYAGRFAMGLSDLGPDAPGIIATQSTHKQLASFSQASQIHMKDRHITGQKRRVEH
RRFNESFMQHASTSPFYPLFASLDVGAQMMKGRSGEVLWDDTIRLGIELRKKIRAVRREF
EEKEHRPERRWFFEPFVPDRVAIPDVSSPGAVHDVPWESVATDQLATNPSFWHLTPDEAW
HGFSGMEPGFAMTDPNKLTLLTPGFDRATGKYTEHGIPAPVVAQYLRENRIVAEKNDLNS
LLFLLTPGVEASKAGTLISGLVAFKKLHDDNALLEEAIPEFYRRRPGRYAGVRLRDLCAE
MHNFFRQADVSALQTKQFSAEHLPPIAMSPHDAARCLVRNDVDYLPIDAIAGRIATTPFV
VYPPGIATIVPGERLTEQAKPMIDYLKMFETCFNTFPGFEVEIQGLYREVDAAGKIRLYT
YVVAE
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atggattatttcagacgtttcaactttctgttcgcgacgccaacctttgacaatgaggat
ctggagggtgcccgctacattcagatcgtcgaggagatcgaacgctccggtttcgaggtg
gtgcgcgcgcgcaatctcgaagacgccgagatcgccgtgcagacggacgctgccatcggc
tgcatgctggtcgactggggcaagaagggcttggaaggcaagactgcttccctcatcaac
ctcatgcgccggcggggcctcgaattccccattatcctactgatccgccgcaagcgcttc
gaggatgtgccggtcgaagtcctcgatttcatcgacggctatgtcttcctgtccgaggaa
acgcccgctttcatcgcaaagagcctcatcagccggctcaagcaatatgccgagacgctg
aagacgcctttcttcggtgcgcttgtcgattatgccgaggagggcaaccacctctggacc
tgccccgggcacaatggcggcatcttctatagccgcagtcctatcggccgtgtcttcatg
gagcatctcggcgaagcggtgtttcgcgacgacctcgacaattccgtgctcgatctcggc
gatcttctgacccatgaagggccggcgcttgccgcgcagaaggaagcagccaagatcttt
ggcgccgagaagacctatttcgtcctcaacggcacgtccacgtcaaacaaggtcgctctg
tcggccctcgtcaccgatggcgatctggtgctgttcgaccgcaacaaccacaaggccgcc
catcacggtgcgctgatgatctcgggcggcattccgctctatctgccgaccgcacgcaat
ctttatggcctgatcggtccgatggactttgcaacgatggacgaggacgcgctgcgcgag
cgcatccgcacccatccgctggtgaaagatccggaggcctacaagaagccgcgcccgttc
cgcgtcgcggtcgtggagcaatgcacctatgacggcaccatccacaatgccgagatgatc
ctcaagcgcatcggccatctgtgcgactacatcctcttcgatgaggcctgggcgggcttc
atgaagtttcatccgctttatgccgggcgctttgccatgggtctttccgacctcggcccg
gatgcgcctggcatcatcgccacccaatccacccataagcagctcgcaagcttctcgcag
gcctcgcagatccacatgaaggataggcacatcaccggccagaagcgccgcgtggagcac
cggcgcttcaacgaaagcttcatgcagcacgcttcgacctcgcccttctatccgctgttt
gcctcgctcgacgtcggcgcgcagatgatgaagggccgctcgggcgaagtgctttgggac
gacacgatccgtctcggcatcgagctgcgcaagaaaatccgtgccgtgcgccgcgaattc
gaggagaaggagcatcgcccggaacgacgctggttcttcgagcctttcgtgccggatcgg
gtggcgattccggatgtgtcgagcccaggcgccgtgcatgacgtgccgtgggaaagcgtg
gcgaccgaccagctcgccaccaatccctccttctggcacctgacgcccgatgaggcatgg
cacggcttttccggcatggaaccgggctttgccatgaccgacccgaacaagcttaccctg
ctcactccgggcttcgaccgagccaccggtaaatacaccgagcatgggattccggcgccg
gtggtcgcgcaatatctgcgcgaaaaccgtatcgtcgccgaaaagaacgacctgaattcg
ctgctcttcctcctcacccccggtgtcgaagccagtaaggccggtacgttgatcagcggc
cttgtcgccttcaaaaagcttcatgacgacaatgcgctgctggaagaggcaatcccggaa
ttctatcgccgccgtccaggccgctatgcaggcgtgcgcctgcgcgatctctgcgctgaa
atgcacaatttcttccgccaggccgatgtgagcgccctgcagacgaagcagttttccgcc
gaacacctgccgccgatcgccatgtcgccgcacgatgccgcacgttgccttgttcgcaac
gatgtcgactatctgccgatcgacgccattgccggccgcatcgcaacgacacccttcgtc
gtctatcctccgggtatcgcgaccatcgtgccgggcgagcgcctgacggaacaggcaaag
cccatgatcgactatctcaagatgttcgaaacctgcttcaacaccttccccggtttcgag
gtggagatacaaggcctctatcgcgaggttgatgcagccggcaaaatccggctctatacc
tacgtcgtcgcggaatag
DBGET
integrated database retrieval system