KEGG   Raoultibacter timonensis: CE91St31_09310
Entry
CE91St31_09310    CDS       T08072                                 
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rts  Raoultibacter timonensis
Pathway
rts03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rts00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CE91St31_09310 (rpoC)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rts03021]
    CE91St31_09310 (rpoC)
   03400 DNA repair and recombination proteins [BR:rts03400]
    CE91St31_09310 (rpoC)
Enzymes [BR:rts01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     CE91St31_09310 (rpoC)
Transcription machinery [BR:rts03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     CE91St31_09310 (rpoC)
DNA repair and recombination proteins [BR:rts03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      CE91St31_09310 (rpoC)
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 RNA_pol_A_CTD HHH_5 TadZ_N DNA_pol_lambd_f
Other DBs
NCBI-ProteinID: BDF50201
LinkDB
Position
1152682..1157100
AA seq 1472 aa
MTTEFDVNNFDALRISLASAEDVRSWSRGEVKKPETINYRTLKPEKDGLFCEKIFGPTKD
WECACGKYKRVRFKGIVCERCGVEVTRSKVRRERMGHIELAAPVSHIWYFKGSPSRLGYL
LDIPPKELEKVLYFASSIITSVDKEAREEDADELRDELAADLEELDAERDRLIEATRRLS
TDYVPEDDDFVDDVDEDERMAPEEVEEEIADIYEEFNERKALRTDAFEAFMKIEPKQLVP
DEALYREMRMNYSDYFKGGMGAEAVRDLLDAIDLAKTADELREVISTGKGQKRAKAIKRL
KVVDAFLKSVNKPTDMILDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLKR
LLDLGAPEIIVNNEKRMLQEAVDSLFDNGRRGRPVTGPGNRPLKSLSDMLKGKQGRFRQN
LLGKRVDYSGRSVIVVGPQLKLHQCGLPSQMALELFKPFVMKRLVELEYAANIKAAKRAV
DRGASYVWDVLEEVITEHPVLLNRAPTLHRLGIQAFEPVLVEGKAIRLHPLVCTAFNADF
DGDQMAVHVPLGNEAQAEARVLMLSANNIKSPAHGRPLTVPTQDMIIGLYYLTAAREGFE
GEGRSFIDFDDAMNAYDARAELDLQAKIWVRLSKDTAVATSYNEFEEHKAGERIETTIGR
ITFNNVLPEDYPYLNYEMNKKEISRLVEDVCNRYELSSVPAILDGLKDAGFHYATRAGVT
VSVYDATVPPNKPEILSRADEKVAAIDEDYEMGLMSQEERHKQVVDIWNEANEEVGEAMA
ENFDKFNPIYMMAFSGARGNIKQIRQLAGMRGLMSDPKGEIIDRPIKANFREGLSVLEYF
ISTHGARKGLADTALRTADSGYLTRRLVDVAQDVIIREIDCGTSDGVPYPIYNEKGDLDE
NLIGRCLLENAVDANGEIVVGAGEYVTSMSQIKALEDAGITEVIIRTVMTCHADQGVCQK
CYGWDLATSRPVNIGTAVGIIAAQSIGEPGTQLTMRTFHTGGVAGEDITHGLPRVTELFE
ARKPKGQAVLAEIAGTLQISGDKQTKTLTIHDQQGNFREYVVSARAQMLPGVLDGSLVKV
GQQLTKGSVNPHDLLRLTDPNTTLRYIVSQVQGVYVSQGVDINDKHIEVIARQMLRKVAV
TDAGESDFLPGRQVNRFEFEKVANGLVLDGKEPPVGQPLLLGITKASLATDSFLSAASFQ
ETTKVLTDAAIEGKVDNLAGLKENVIIGKPIPAGTGLPRYRKVGLTYKGRPVDRVTSDTL
PEFAPDALRDIEDLLPQPQDWSLDGDSYLNMGTNYTNYYSGMSLGHRTPNLTDEDARLYI
YDDLGVSQRWANKFSEAGIETVADLVGHTEEDLLRIEGIGVKAIEELKEGLEQHNLLHVI
EDDLAATSDDMSQLLDMVFSPDDTILIGGDEPPTFNTEGEDMLGEALPPRSYQRNLEELD
ALLGSVGSIGFGFSNSEDDDALGDESGSDEEK
NT seq 4419 nt   +upstreamnt  +downstreamnt
atgacgacggaattcgacgtgaacaacttcgatgccctgcgcatttccctcgcttccgcc
gaggacgtgcgcagctggtcccgtggcgaagtgaagaagcccgagaccatcaactaccgc
acacttaagcccgagaaagacggcttgttctgcgaaaagatcttcggccccacgaaggac
tgggagtgcgcgtgcggcaagtacaagcgcgttcgcttcaagggcatcgtctgcgagcga
tgcggcgtcgaagtgactcgctccaaggttcgccgcgagcgcatgggccacatcgagctc
gctgctccggtgagccatatctggtacttcaagggctcgccctcccgcttgggctacctg
ctcgacattcctccgaaggagctcgagaaggtgctgtacttcgcaagctccatcatcacc
tcggtggataaggaggcgcgcgaggaagacgccgacgagctgcgcgacgagttggcagcc
gatctcgaagagctggacgccgagcgcgatcgcctcatcgaggcgacccgccgcctgtcg
accgattacgtgccggaggacgatgatttcgtcgacgacgtcgacgaggacgagcgtatg
gcacccgaagaggtcgaagaggagatcgccgacatctacgaggagttcaacgagcgcaag
gcgcttcgcaccgatgcgttcgaggccttcatgaagatcgagcccaagcagctcgttccc
gatgaggctctctaccgcgagatgcgcatgaactactccgattacttcaagggcggcatg
ggcgccgaagccgtgcgcgatctgctcgacgcaatcgatctggccaagacggcagacgag
ctgcgcgaggtcatctcgaccggcaagggccagaagcgcgccaaggccatcaagcgcctc
aaggtcgtcgatgcgttcctcaagagcgttaacaagcccaccgacatgatcctcgacgtc
atcccggtcatcccgcccgatctgcgcccgatggtgcagctcgacggcggccgcttcgcc
acgtcggatctgaacgacctgtaccgtcgcgtgatcaaccgcaacaaccgcctgaagcgc
ctgctcgatctcggtgcgcccgagatcatcgtgaacaacgagaagcgcatgctgcaggag
gccgtcgattcgctgttcgacaacggccgtcgcggccgccccgtcacggggccgggcaac
cgccccctgaagtcgctctccgacatgctcaagggcaagcagggccgtttccgtcagaac
ctgctcggcaagcgcgtcgactactccggccgttcggtcatcgtggtcggcccgcagctg
aagctccaccagtgcggtctgccgtcgcagatggcgctcgagctcttcaagcccttcgtt
atgaagcgcctggtcgaactcgagtacgccgccaacatcaaagcggctaagcgcgcggtc
gaccgcggcgccagctacgtgtgggacgtgctcgaagaggtcatcaccgagcacccagtg
cttctcaaccgcgcacccaccctgcaccgtttgggcattcaggcgttcgagcccgtgctc
gtcgaaggcaaggccatcaggctccatcccctcgtctgcaccgcgttcaacgccgacttc
gacggcgaccagatggccgtgcacgtgccgctcggcaacgaggcgcaggccgaggcccgc
gtgctcatgctctcggccaacaacatcaaatcgcctgctcacggccgcccgctgacggtt
cccacgcaggacatgatcatcggcctgtactacctcaccgccgctcgcgagggcttcgag
ggcgagggcaggtcgttcatcgacttcgacgacgccatgaacgcctacgacgcgcgcgcc
gaactcgacctgcaggctaagatctgggtgcgcctttccaaggacaccgcggtcgcgacc
tcctacaacgagttcgaggagcacaaggccggcgagcgcatcgagaccacgatcggccgc
atcacgttcaacaacgtgctgcccgaggattacccgtatctcaactacgagatgaacaag
aaggaaatcagccgcctcgtggaggacgtgtgcaaccgctacgagctctcttcggtgccg
gccatcctggacggcctcaaagacgcgggcttccactacgcgacgcgcgctggcgttacc
gtgtcggtgtacgacgcgaccgtgccgccgaacaagcccgagatcctcagccgcgccgac
gagaaggttgcggctatcgacgaggactacgagatgggcctcatgagccaggaggagcgc
cacaagcaggtcgtcgacatctggaacgaagccaacgaagaggtcggcgaggccatggcc
gagaacttcgacaagttcaaccccatctacatgatggcgttctccggtgcccgtggtaac
atcaagcagattcgccagcttgcgggcatgcgcggtctcatgtccgacccgaagggcgag
atcatcgaccgcccgatcaaggcgaacttccgcgaaggcctctcggtactcgaatacttc
atctccacgcacggtgcccgtaagggcctcgccgacacggcgctcagaaccgccgactcg
gggtatctgacccgtcgtctcgtggacgtcgcccaagacgtcatcatccgcgagatcgat
tgcggcacctccgacggcgtgccgtacccgatctacaacgagaagggcgacttggacgag
aacctcatcggccgttgcctgctcgagaacgcagtcgatgcgaacggcgagatcgtcgtc
ggcgcaggcgagtacgtgacgtcgatgtcgcagatcaaagcgcttgaggatgcgggcatc
accgaagtcatcatccgtaccgtcatgacctgccacgccgatcagggcgtgtgccagaag
tgctacggctgggacctcgcaacgtcgcgtccggtcaacatcggcacggcggtcggcatc
atcgccgcccagtcgatcggcgagcccggcacgcagctcaccatgagaacgttccacacc
ggcggcgtcgcgggcgaggacatcacccacggtctgccccgcgttaccgagctgttcgag
gcccgcaagccgaaaggccaggcggtcctcgccgaaatcgcaggtactctgcagatttcg
ggcgacaagcagaccaagacgctcacgatccacgaccagcagggcaacttccgcgagtac
gtggtgtctgcgcgcgcccagatgcttccgggtgtgctcgacgggagccttgtcaaggtc
ggccagcagctcacgaagggttcggtgaacccgcacgaccttctgcgcctcaccgacccg
aacacgacgctgcgctatatcgtgagccaggtgcagggcgtgtacgtgagccagggcgtc
gatatcaacgacaagcacatcgaggttatcgcgcgccagatgctgcgcaaggtagccgta
accgacgcgggcgagtccgacttcttgccgggccgccaggtgaaccgcttcgagttcgag
aaagttgccaacggcctcgttctcgacggcaaggagccgccggtcggccagccgcttcta
ctcggcatcaccaaggcgtcgcttgccaccgattcgttcctttcggccgcgtcgttccag
gagaccaccaaggtcctcaccgatgccgccatcgagggcaaggtcgacaaccttgcgggc
ctgaaggagaacgtcatcatcggcaagccgattcccgccggtaccggtctgccgcgctac
cgcaaggtcggcctcacctataagggccgtccggtcgatcgcgtgacgagcgatacgctg
cccgagttcgcgcccgacgcgttgcgcgatatcgaggacctgctgccgcagcctcaggat
tggtcgctcgacggcgacagctacctcaacatgggcacgaactacacgaactactacagc
ggcatgtcgctcgggcaccgcacgcccaacctcaccgacgaagatgcgcgtctctatatc
tacgacgatctgggcgtatcccagcggtgggcaaacaagttctccgaggcaggtatcgag
acggttgccgatctcgtgggccataccgaggaggatctgctgcgcatcgagggcatcggc
gtcaaggcgatcgaggagctcaaagagggcttggagcagcacaacctgctccacgtcatc
gaggacgacctcgctgcaacgagcgacgacatgagccagctgctcgatatggtgttcagc
ccggacgatacgatcctcatcggcggcgacgagcctccgacattcaacaccgagggcgag
gatatgctcggcgaggcgcttccgccgcgttcgtaccagcgcaacctcgaggagctcgac
gcgttgctcggctccgtcggttcgatcgggttcggcttctcgaactccgaggacgatgac
gccctcggcgacgagtccggctccgacgaagagaaatag

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