Raoultibacter timonensis: CE91St31_18360
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Entry
CE91St31_18360 CDS
T08072
Name
(GenBank) RNA polymerase sigma-54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
rts
Raoultibacter timonensis
Pathway
rts02020
Two-component system
rts02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
rts00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CE91St31_18360
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
CE91St31_18360
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rts03021
]
CE91St31_18360
Transcription machinery [BR:
rts03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CE91St31_18360
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
Sigma70_r4
HTH_Tnp_ISL3
HTH_3
HTH_31
HTH_6
HTH_IclR
LacI
HTH_21
Motif
Other DBs
NCBI-ProteinID:
BDF51106
LinkDB
All DBs
Position
complement(2202989..2204374)
Genome browser
AA seq
461 aa
AA seq
DB search
MKFDQRPDLSLNQHLHLTTELKQGISILRMSAAELSEYVRQCVEENPFLDEDDWVEPRHP
AIPERYMQDVSADALFEKRGHGSPESFDRERSDMSQRSFSIDRYLTETDSLDAFLSDQLR
IQSDCTRTMVVGKYLIGNLDSNGYLCMSVDQVAAALGISEGEVGRVLSLVQQFEPTGVAA
RNLAECLELQLRKSGDLTPMLERLIKNYLADFETRTPASIARDMGVTLAELNEALDVIRT
CNPRPAAQFGQPSRPIWPEVVVELDADGEYTVSLQDFYLPHMKINPTYRTLASTAKESEA
KAYLTEKLKEAESLIDGINFRHATLYKIACCIVQMQIEFFVRGYDCLRPLTMAQVANASD
VSESTVSRIVRGNYMQTPRGVFELRFFFHSSAYRAADRVVSSVSVKHRISELIANEDASA
PLSDQAVSDLLAREGVSVSRRTVNKYRDELGIPARAARRRC
NT seq
1386 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcgaccaaagaccggatctatccctcaatcagcatctgcatctcaccaccgag
ctcaagcagggcatatccatcctgcgcatgtcggcggcagagttgagcgagtacgtgcgg
cagtgcgttgaggaaaacccgtttctcgacgaggacgattgggtcgaaccgcgtcatccg
gccatccccgagcgctatatgcaggacgtgagcgccgatgcgctcttcgaaaagcggggg
cacggcagtccggagagtttcgacagagagcgaagcgacatgtcgcagcgatccttctcg
atcgaccgctacctgacagagacggattcgctcgatgcgttcttgagcgatcagctgcgc
attcagtccgattgtacgaggacgatggttgtcggcaagtaccttatcggcaacctcgat
tcgaacggctatctttgcatgtccgttgatcaggtggcagccgccttgggaatctccgag
ggggaggtcggacgggtgttgtcccttgtccagcagttcgagccgaccggggtggccgca
cgaaatcttgccgaatgcctcgagctgcagctgaggaagagcggcgatttgactccgatg
ctcgagcgtttgataaaaaactatctcgctgatttcgaaacgcgaacccccgcttcgatc
gcccgggacatgggagtcacgcttgcggagctgaacgaggcgctcgatgtgattcggacg
tgcaacccgcgtcccgccgcgcagttcggccagccgtcgcgccccatttggcccgaagtg
gtcgtggagctggacgcggacggtgaatatacggtgagccttcaggatttttaccttccc
catatgaaaatcaaccccacataccgcacgttggcctcgactgcgaaggaaagcgaagcg
aaggcgtatcttaccgagaagctcaaagaagccgaaagccttatcgacggcatcaacttc
aggcatgctacgctgtataagatcgcatgctgcatcgtgcagatgcagatcgagttcttt
gtgaggggttacgattgcctgaggcccctcactatggcccaggtagccaacgcttccgac
gtgtccgagtcaacggtgagtcgcatcgtccgcggcaactacatgcaaaccccccgcggc
gtattcgagctgaggtttttctttcactcatcggcctatcgggcggccgatcgcgtggtg
tcgtcggtgagcgtcaaacaccgcataagcgagctcattgcgaacgaggacgcttcggcg
ccgctcagcgatcaagcggtatccgacctgcttgcgcgtgaaggcgtttccgtttctcgc
agaacggtcaacaagtaccgagacgaactgggcattcccgcccgcgccgcccgtcggcgc
tgctag
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