Rhizobium tumorigenes: PR017_05090
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Entry
PR017_05090 CDS
T08990
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
rtu
Rhizobium tumorigenes
Pathway
rtu03030
DNA replication
rtu03430
Mismatch repair
rtu03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rtu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PR017_05090 (dnaE)
03430 Mismatch repair
PR017_05090 (dnaE)
03440 Homologous recombination
PR017_05090 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rtu03032
]
PR017_05090 (dnaE)
03400 DNA repair and recombination proteins [BR:
rtu03400
]
PR017_05090 (dnaE)
Enzymes [BR:
rtu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PR017_05090 (dnaE)
DNA replication proteins [BR:
rtu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PR017_05090 (dnaE)
DNA repair and recombination proteins [BR:
rtu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PR017_05090 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DUF655
HROB
Motif
Other DBs
NCBI-ProteinID:
WFR96507
UniProt:
A0AAF1KRA1
LinkDB
All DBs
Position
1025294..1028788
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AA seq
1164 aa
AA seq
DB search
MAEATDRQGGPSGSSPEFVHLRVHSAYSLLEGALPLKKILAKASSDSQPALAITDTNNLF
IALEFSQKAMDEGLQPIIGCQVSIDMEDAVEGEKRNGQQGLTKLPAIVLLAASDAGYERM
VDLVSRAYLGGDNSQAVHVKASWLEEIGTDGLIALSGSVGGPVDIEIKEGHPQKAVARLL
RLKALFGDRLYVELQRHGTYDRRHEQRMIALAYEHELPLVATNEAFFPTRDDYDAHDALM
AVAHNAIVSDDSRFRLTPDHYLKSRAEMAKLFADLPEALANTIEIAERCAFVLQTRKPIL
PRFTGASDDPKEAERAEALELRAQAVEGLDMRLATLGTAPGYDEQVYRDRLEFELGVIER
MGFPGYFLIVADFIKWAKNEDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNP
DRVSMPDFDIDFCQDRREEVIRYVQKKYGREQVAQIITFGSLQARAALRDVGRVLEMPYG
QVDKISKLVPNNPANPVTLAQAIKDEPRFQEEADKEPVVARLLDIAQKLEGLYRHASTHA
AGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVEQAGLVKFDFLGLKTLTVLKTAVDFV
KLRGISVDLATIPLDDAVTYEKLARGETVGIFQVESQGMRKALLGMRPDCIEDIIALVAL
YRPGPMENIPTYNARKHGEEEIESIHPMIDHLVKETQGVIVYQEQVMQIAQVLSGYSLGE
ADLLRRAMGKKIKAEMDQQRVRFVEGSMKNGVSKVQSDNIFELLAKFANYGFNKSHAAAY
AIVSYQTAYMKAHYPVEFLAASMTLDMANTEKVNDFRQDAKRLGIDVVAPSVQTSFRHFQ
TGDRTIFYSLAAIKGVGDAAVEHIVEVRGDKPFASIEDFCLRIDPKQVNRRVLESLLYAG
AFDCFGIDRAQLLAGMERLIGYAQLAQENRRSGQHDMFGSGSASGPERISFPAFTPWLAS
ERLLKEFQVLGFYLTAHPLDAYSGVLDKLRVQSFADFAAGIKHGAGNARLAGTVIAKQER
KTRTGNKMGIYTFSDATGQFEAVMFSELLAQYRDILEVGKSFVLTAAAEERPEGISLRLN
SVQSLEEKSLQMQKAMRVFVRDSGPLKMVAAHLNARGDGLVSFIVIKEDGKREVEVALPD
KYRISPEIAAAMRSAPGVIDVELV
NT seq
3495 nt
NT seq
+upstream
nt +downstream
nt
atggcagaggcaactgacaggcagggcggaccctcgggatcgtcgccggagttcgtgcat
ctgcgtgtgcattcggcatattcgcttctagaaggcgctttgccgctcaagaagatcctc
gccaaggcttcaagcgacagccagccggctctggcgattaccgacaccaacaacctgttc
atcgcgctcgagttctcccagaaggcaatggacgaaggcctgcagccgatcatcggctgc
caggtttcaatcgacatggaagacgccgtcgagggcgagaagcgcaacggccagcagggg
ctcaccaagctgcctgccatcgtgcttctggcggccagcgacgccggctatgagcgcatg
gtcgatctcgtcagccgcgcctatctcggcggcgacaatagtcaggccgtgcacgtcaag
gcgtcctggctggaggagatcggtacagacggcctgatcgcgctgtccggctccgttggt
gggcccgtcgatatcgaaatcaaggaaggccatccgcagaaggcggtggcgaggctgctg
cgcctgaaggcgctgttcggcgaccggctctatgtcgagctacagcgccacggcacctat
gatcgccgccacgaacaacgcatgattgcactcgcctacgagcacgaactgccgttggtc
gccaccaacgaggccttctttccgacccgcgacgactacgatgcccatgatgcgctgatg
gctgtcgcccacaatgcgatcgtctcggacgacagccggtttcgcctgacgccggaccac
tatctgaaaagccgcgccgaaatggcaaagctgtttgccgatctgccggaggcgctggcc
aacaccatcgagatcgcagagcgctgtgccttcgtgctgcagacccgcaagccgatcctg
ccgcgttttaccggcgccagcgatgatccgaaggaggccgagcgcgccgaggcgcttgaa
ctgcgggctcaggctgtcgaagggctcgatatgcggctggcgacactgggcacggcgccg
ggctatgacgaacaggtctatcgcgaccggctggaattcgaactcggcgttatcgagcgc
atgggttttccgggctacttcctgatcgttgccgacttcatcaagtgggcgaagaacgag
gatatcccggttggtcccgggcgcggatcgggagcaggctcgctggtcgcctatgcgctg
accatcaccgatgtcgaccctttgcgtttctcgctgctgttcgagcgctttctcaatccc
gatcgtgtgtcgatgcccgacttcgacatcgacttctgccaggaccggcgcgaagaagtc
atccgctacgtccagaagaagtacggccgcgagcaggtggcgcagatcatcaccttcggt
tcgctgcaagcccgtgccgccctgcgcgatgtcggccgcgtgctggaaatgccctatggc
caggtcgacaagatatctaagctggtgccgaacaacccggccaatccggtgacgctcgca
caggcgatcaaggacgagccgcgatttcaggaggaggccgacaaggagccggtggtcgcg
cgcctgctcgacatcgcccagaaactggagggtctctatcgccacgcctcgacccacgcc
gccggtatcgtcatcggcgaccggccgctgtcgaagctggtgcctatgtaccgcgatccg
cgctccgacatgccggtcacccagttcaacatgaagtgggtcgaacaggctggtctcgtc
aagttcgactttctcggcctgaagactttaacggtgctgaagacggcagtcgatttcgtg
aaactccgcggcatatcggtcgatcttgccaccattccactcgatgacgcggtgacctac
gagaagctggcgcgcggcgaaacggtcggcatcttccaggtggaaagccaggggatgcgc
aaggcgctgctcggcatgcggcccgactgcatcgaggacatcatcgcgctggtggcgctt
tatcgtcccggcccgatggaaaatatcccgacctacaatgcccgcaagcacggcgaggag
gagatcgagtcgatccacccaatgatcgaccacctcgtcaaggaaacgcagggcgtcatc
gtctaccaggaacaggtgatgcagatcgcccaggtcctgtcgggctactcgctcggcgag
gcggatcttttgcgccgcgccatgggcaagaagatcaaggcggagatggaccagcagcgc
gttcgcttcgtcgaaggttcgatgaagaacggcgtctcgaaggtgcagtccgacaacatt
ttcgaacttctggccaaattcgccaattacgggttcaacaagtcgcatgccgccgcctac
gccatcgtctcctaccagacggcctatatgaaggcccactacccggtcgagttcctcgcc
gcgtcgatgacgctggacatggccaacaccgaaaaggtcaacgatttccgtcaggatgcc
aagcgcctgggcatcgacgtcgtggcgccctcggtacaaacctcgttccgccatttccag
accggcgaccggacgatcttctattcgctggctgccatcaaaggagttggcgatgccgcc
gtcgaacacatcgtcgaagtgcgtggtgacaagccctttgccagtatcgaggatttctgc
ctgcgtatcgacccgaaacaggtcaatcgccgcgttctggaaagcctgctgtatgccggc
gccttcgattgcttcgggatcgaccgggcccagcttctggcaggcatggaacggctgatt
ggctatgcccagcttgcgcaggaaaaccgccgcagcggccagcatgacatgttcggctct
ggctccgcctcaggcccggaaaggatttccttcccggccttcacgccttggctagcctcc
gaacggctgctgaaggagttccaggttctcggtttctacctcaccgcccatccgctcgat
gcctatagcggggtactcgacaaattacgggtgcagagctttgccgactttgctgccggc
atcaagcacggcgccggcaatgcgcggctggccggcaccgtcatcgccaagcaggagcgc
aagacgcgcaccggcaacaagatggggatctacacattctcggacgccaccggccagttc
gaggctgtcatgttttccgaattgctggcgcagtaccgcgacatcctagaggtgggcaaa
tccttcgtgctgacggccgccgccgaggagaggcccgaaggtatcagcctgcggctgaat
tccgtgcagtcgctggaggaaaaatcgctgcagatgcagaaggccatgcgcgtcttcgtg
cgcgattcaggcccgctgaagatggtggccgcccatctcaacgccaggggcgacggcctt
gtatccttcatcgtcatcaaggaagacggcaagcgcgaggttgaagtcgcgctgcccgat
aagtaccgcatctcaccggaaattgccgccgccatgcgaagtgcgccgggggtcatagac
gtcgagctggtttga
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