Rhizobium tumorigenes: PR017_05155
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Entry
PR017_05155 CDS
T08990
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
rtu
Rhizobium tumorigenes
Pathway
rtu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PR017_05155 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtu03019
]
PR017_05155 (rnr)
03016 Transfer RNA biogenesis [BR:
rtu03016
]
PR017_05155 (rnr)
Enzymes [BR:
rtu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
PR017_05155 (rnr)
Messenger RNA biogenesis [BR:
rtu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PR017_05155 (rnr)
Transfer RNA biogenesis [BR:
rtu03016
]
Prokaryotic type
tRNA degradation factors
PR017_05155 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
WHD_RNase_R
Motif
Other DBs
NCBI-ProteinID:
WFR96520
UniProt:
A0AAF1KSZ1
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All DBs
Position
complement(1041527..1043917)
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AA seq
796 aa
AA seq
DB search
MSREPRSRPSPVERRLGKPVRAAKAGAVKSDVTAPARDTIVQGVLPPREVILRFIADHPQ
QASKRELAKAFGLKGEQRVELKNLLRDLEEDGMVQKNRKSLMRPGALPPVTVLDITTRDK
DGELIGRPAEWPEDAGVAPAVAIRQTSSPAGRNGKGKAPVAGMGDRVLAKIFPAGDRGGP
AYTARIIKVLDRRRSAALGVFRETPGGGGRLMPVERRGEEMVIDPEDVGTAKDGDLVEIE
VARLGRFGLPRAKVLSVLGSIGSEKAISMIAIHAHGIPYIFPLPVLAEADDAKPATMKSR
EDWRNVPLITIDPADAKDHDDAVYAELDPSPDNVEGVIVNVAIADVSWYVRPNSMLDREA
QKRGNSVYFPDRVVPMLPERISNDLCSLKEGVDRPAIAVRMVFSREGRKIGHTFHRIMMK
SAAKLSYQQAQAAIDGTPDDQTGPLLEPILKPLYHAYGVMKRGRDRRQPLELDMPERKIQ
LKPDGTVDRVVVPPRLDAHKLIEEMMIQANVAAAETLEKQRQPLVFRIHDGPSLAKQEIL
RTFLATLDIPLAKGGNMRANNFNGILAKAEGTPHQTMVSEMVLRSQSQAIYSPENIGHFG
LNLMKYAHFTSPIRRYADLIVHRALVGSLGFGEGGITPEQEAGLDDIAAEISTFERRAMA
AERETVDRLIAHHLSNRVGEEFDGRVGGVTKSGLFIALPEFGADGFIPISTLGNDYYIYD
EAHQALVGDRTGLGYRLGDSVKVKLVEAVPLAGALRFEMLSEGRELPRGMRSFHKSGRGG
TPVRKKPGTRPPRGRK
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
gtgagcagagaaccgcgcagcagaccgtcgcccgtcgaacgtcgtctcggcaagcccgtg
cgtgccgccaaggccggcgcggtcaagagtgatgttacggcgccagccagggacacgatc
gtccagggtgtattgccgccgcgcgaagtcatcctgcgcttcattgccgaccatccacag
caagcctccaagcgcgaactggccaaggccttcgggctgaagggcgagcaacgcgtcgaa
ctgaaaaacctgctgcgcgacctcgaagaggacggcatggtgcagaagaaccgcaagtcg
ctgatgcggccaggcgctcttccccccgtgaccgtgctcgacatcaccacccgcgacaag
gacggcgagctgatcggccgcccggcggaatggccggaggatgccggcgtcgcgccggcc
gtcgccatccgccagacatcatcgccggccggtcgcaacggcaagggcaaggcaccggtg
gccggcatgggcgaccgggtgctggcaaagatctttccggccggagaccgcggcggaccg
gcctatacggcgcggatcatcaaggttctcgaccgtcgccgcagtgctgctctcggcgtt
ttccgagagacgcccggtggtggcggaaggctgatgccggtcgagcggcgcggcgaagaa
atggtcatcgatcccgaggatgtcggcaccgccaaggatggcgacctggtcgagatcgaa
gttgcgcgtctcggccgcttcggcctgccgcgcgccaaggtcctgtcggtacttggctcg
atcggctcggaaaaggcaatctcgatgattgccatccatgcccatggcatcccctacatc
ttcccgctgccggtgctagccgaggccgacgacgccaagccagcgacgatgaagagccgc
gaagactggcgcaacgtgccgctgatcaccatcgatccggccgacgccaaggaccacgac
gacgccgtatatgccgagctggacccttctcccgacaatgtcgaaggcgtcatcgtcaac
gtcgcaatcgccgacgtctcctggtatgtcaggccgaattccatgcttgaccgggaggca
cagaagcgcggcaactcggtctacttccccgaccgggtggtgccgatgctgccggagcgg
atctccaacgatctctgctcgctgaaggaaggcgtcgacaggccggcgatcgccgtgcgc
atggtgttttcgcgcgagggccgcaagatcggccacaccttccaccgtatcatgatgaag
agtgcggccaagctctcctaccagcaggcgcaggcggcgatcgacgggacgcctgacgac
cagacaggcccgctgctggaaccgatcctcaagccgctctaccatgcctatggcgtgatg
aaacgcggccgtgaccgcaggcagccgctggaactcgacatgcccgagcgcaagatccag
ctgaagccggatgggacagtcgaccgcgtcgtcgtgccgccgcggctggatgcccacaag
ctcatcgaagaaatgatgatccaggcgaacgtcgccgctgccgagacgctggaaaagcag
cggcagccgctggtattccgcatccatgacggcccgtcgcttgccaagcaggagatcctg
agaacatttcttgcgacgctcgacattccgctcgccaagggcggcaacatgcgcgccaac
aattttaacggcattcttgccaaggcagaaggcacgccgcaccagacaatggtcagcgag
atggtgctgcgctcccagagccaggcgatctacagcccggagaatatcggccatttcggc
cttaacctgatgaagtacgcccacttcacctcgccgatccgccgctacgccgaccttatc
gtccaccgcgcgctggtcggttcgctcgggtttggcgaaggcggcatcacgccggagcag
gaagccggtctcgacgacatcgcggcggaaatctcgacctttgagcggcgcgccatggcg
gccgagcgcgagaccgtagaccgcctgattgcccatcacctcagcaaccgtgtcggcgaa
gagttcgacgggcgcgtcggcggcgttaccaagtctggcctgttcatcgcactgccggaa
ttcggcgccgatggcttcattccgatctcgacgctcggcaacgactattacatctatgac
gaggcgcaccaggcgctggtcggcgaccgcacagggcttggctatcgccttggcgacagc
gtcaaggtgaaactggtggaagcggtgccgctggcaggcgcgctgcgcttcgagatgctg
agcgagggacgcgaactgccgcgtggcatgcgttcgttccataagtctggacgcggcggc
acgccggtgcgcaagaagcctgggacgaggccaccgcgcggacggaaatag
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