Arminella tumorigenes: PR017_05330
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Entry
PR017_05330 CDS
T08990
Name
(GenBank) ribonuclease E/G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rtu
Arminella tumorigenes
Pathway
rtu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PR017_05330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtu03019
]
PR017_05330
03009 Ribosome biogenesis [BR:
rtu03009
]
PR017_05330
Enzymes [BR:
rtu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
PR017_05330
Messenger RNA biogenesis [BR:
rtu03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PR017_05330
Ribosome biogenesis [BR:
rtu03009
]
Prokaryotic type
rRNA processing factors
PR017_05330
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WFR96553
UniProt:
A0AAF1K5M6
LinkDB
All DBs
Position
complement(1074031..1076994)
Genome browser
AA seq
987 aa
AA seq
DB search
MADKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFAEIHPDYYQIPLADRQALLRAEAEEHRRDNDVEHVETAFDLAEQEQPDV
GIVAAPEPVAPVAEDAVVAQEHVAAEAGAAAAEPAPVEVSAEPVADAEPASAEAPVAEAE
AETPVKKVAKPRRSRAKKVVAEDATPSDVEAPSSDGSDEGSSGSMAAMVETDEVSEDVRP
SGRRNNDDDDDDDHEEEIIESVGAEDAMEEVPERAARRPRKQYRIQEVIKRRQILLVQVA
KEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDRKRLKEIARMLEVPLGM
GVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLASTAPTLVYEEGSLIKRSIRDLYNK
DISEVIVAGEEGYREAKDFMKMLMPSHAKVVQPYRDIHPIFSRSGIEAQLDRMLQPQVTL
KSGGYLILNQTEALVAIDVNSGRSTREHSIEETALQTNLEAAEEVARQLRLRDLAGLIVI
DFIDMEEKRNNRAVEKKLKECLKDDRARIQVGRISHFGLLEMSRQRIRASVLESTTQVCS
HCGGTGLVRSQSSVALHVLRGIEEYLLKNTTHDITVRCTPETALYLLNHKRATIIDYENR
FGVSIIIDSDPSVGAQHFAIDRGEAVENPVKIETLFNFAAIEEDEDDDVPVEIDEDEEEE
IEEKAAPVEQAVARSEGDPNRKRKRRRRRRGKNGGADGQVMQDADGNDIVGDDSDDADGD
DEDDSDDDKAAVEGEGEVSALSSDEQGKRKRRRRGKRGGRRNRDENGNLIADGEGTDGEE
ATSTDEGDESAATGVTAEAPAFEQPASIEAEVATEEQVKPKGRSRRKPKAEVAEAPAAET
VAEPAVAAEPVVSQPVVVEPEAPVAAASIAEPAASPATEVEKPARANRQSNLASSEPAVK
STQATDKATDGDGKPKKAGWWQRRGFF
NT seq
2964 nt
NT seq
+upstream
nt +downstream
nt
atggcagacaaaatgcttatcgacgcgtctcacgaggaagagacgcgcgttgtcgtggtt
cgcgggaaccgcatagaagaattcgacttcgagtcagagcacaagaagcaaattcgcggc
aacatctacctggccaaagtcacccgcgtcgagccgtccctgcaggctgcattcgtcgat
tacggcggcaaccggcacggcttcctggcctttgccgaaatccaccccgattattaccag
atcccgcttgccgaccgccaggcgctgctgcgcgccgaggctgaagagcatcgccgcgac
aacgacgtcgaacacgtcgagaccgccttcgatctggccgagcaggagcagccggatgtc
ggcatcgtcgcagcgccggagcctgtcgctcccgttgccgaagatgccgtggttgcacag
gaacacgtcgctgcagaagccggcgccgctgctgccgagccggcacctgtcgaggtttcc
gccgagccggttgccgatgccgagccagcaagcgctgaagcgccagttgcagaagctgaa
gccgaaacacctgtaaagaaggtcgccaagccacgccgcagccgcgccaagaaggttgtc
gccgaagatgcgacgccatccgacgtcgaagcgccgtcatccgacggcagcgacgaaggt
tcgtccggctcgatggctgccatggtcgaaaccgacgaggtttcggaagacgtccgtccg
tccggccgtcgcaacaacgacgacgatgacgacgacgaccacgaagaagagatcatcgaa
tcggttggcgccgaagacgccatggaagaggttcccgagcgtgccgcgcgccgtccgcgc
aagcagtaccgcatccaggaagtcatcaagcgccgtcagatcctgctggttcaggtggcc
aaggaagaacgcggcaacaagggtgcagcactcaccacctatctgtcgctcgccggccgt
tactcggtgctgatgccaaacactgcacgcggtggcggcatttcgcgcaagatcaccaac
ccgcaggaccgcaagcgcctgaaggaaatcgcccggatgctcgaagtgcctttgggcatg
ggtgtcatcctgcgcacggctggcgccaaccgtaccaaggtcgaagtcaagcgcgacttc
gaatacctgatgcgcctttgggagaacgttcgcacgctcaccctcgcctccacggcgccg
acgctggtctatgaagaaggctcgttgatcaagcgctcgatccgcgatctctacaacaag
gacatttcggaagtcatcgtcgccggcgaagaaggctatcgtgaagccaaagacttcatg
aagatgctgatgccgagccacgccaaggtggtccagccttaccgcgacatccatccgatc
ttctcgcgctccggcatcgaggcgcagcttgaccgcatgctgcagccacaggtgacgctg
aagtccggcggctacctgatcctcaaccagacagaagcgctggtagcgatcgacgtcaac
tcgggccgctctacccgcgagcactcgattgaagagacggcgctccagacaaacctggaa
gcggccgaggaagtcgcccgccagctgcgccttcgcgaccttgccggcctgatcgtcatc
gacttcatcgacatggaagaaaagcgcaacaaccgcgctgtcgagaagaagctgaaggaa
tgcctgaaggacgaccgcgcccgcatccaggtcggtcgcatctcgcatttcggccttctc
gagatgtcgcgccagcgtatccgcgcttccgtgctggaatcgaccacgcaggtctgctcg
cattgcggcggcaccggactggtgcgctcgcagtcgtcggttgccctgcatgtgctccgc
ggcatcgaagaatatctgctgaagaacacgacgcacgacatcaccgtgcgctgcacgccg
gagacggcgctctacctgctcaaccacaagcgggcgacgatcatcgattatgaaaaccgc
tttggtgtgtcgatcatcatcgacagcgacccgagcgtcggtgcccagcactttgccatc
gatcgcggcgaagccgtcgagaacccggtaaagatcgaaaccctgttcaacttcgctgcc
atcgaggaagacgaggacgacgacgtacccgtcgagatcgacgaggacgaagaagaagag
atcgaggaaaaggccgctcctgtcgaacaggccgtggcacgctccgagggcgacccgaac
cgcaagcgcaagcgtcgccgtagacgtcggggcaagaatggcggggccgacggccaggtc
atgcaggatgccgacggcaatgacattgttggcgacgacagcgacgacgccgatggtgac
gacgaggacgacagcgacgacgacaaggccgcagtcgagggcgaaggcgaagtttcggca
ctgtcgagcgacgagcagggcaaacgcaagcgtcgccgtcgtggcaagcgtggcggtcgc
cgcaatcgcgacgagaacggcaacctgatcgccgacggcgaaggcacggacggcgaagaa
gcaacgtctaccgacgaaggcgacgagagcgcagcaacgggcgtgacggcagaggcgccc
gcctttgagcagcctgcctcaatcgaggccgaagttgcgaccgaggaacaggtcaagccg
aagggccgtagccgccgcaagccaaaggccgaggttgccgaggcacctgcagcggaaacc
gttgccgagcctgcagttgccgccgaacctgtggtgtctcagcccgtggtcgtcgagcca
gaagctccggttgccgcagcttccatcgccgagcctgcagcatccccggcgacagaagtc
gagaagcctgcccgcgccaaccgccagtccaacctcgcctcctccgagcctgcggtcaaa
tcgacccaggccacggacaaggcaacagacggcgacggcaagccgaaaaaagccggctgg
tggcaacgccgcggcttcttctga
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