Rhizobium tumorigenes: PR017_05585
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Entry
PR017_05585 CDS
T08990
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
rtu
Rhizobium tumorigenes
Pathway
rtu03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
rtu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PR017_05585 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rtu03021
]
PR017_05585 (rpoC)
03400 DNA repair and recombination proteins [BR:
rtu03400
]
PR017_05585 (rpoC)
Enzymes [BR:
rtu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PR017_05585 (rpoC)
Transcription machinery [BR:
rtu03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PR017_05585 (rpoC)
DNA repair and recombination proteins [BR:
rtu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PR017_05585 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
WFR96597
UniProt:
A0AAF1KRC7
LinkDB
All DBs
Position
1119961..1124169
Genome browser
AA seq
1402 aa
AA seq
DB search
MNQEVMNLFNPQVPAQNFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTALKEHHMLSEEEYMLAVDEYGEDQFTA
MIGAEAIFELLASMDLEKIAGDLRQDLADTTSDLKQKKLMKRLKIVENFMESGNRPEWMI
MKIVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM
LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDLGELHHALE
NKVVTLHSKVRGRFKSIDEEGKPYSKIYETTPGRMLIGELLPKAFKVPYETCNQEMTKKN
ISKMIDTVYRHCGQKDTVIFCDRIMQLGFAHACRAGISFGKDDMVIPETKAKIVGDTESL
VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEDMMARIKAVEFDEATGRQKPMNAIY
MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL
ADTALKTANSGYLTRRLVDVAQDCIVTHVDCGTESGLTMTAIVDAGQVVASIGVRILGRT
ALDDIDHPVTGERIVDAGKMILEPDVIEIEKAGIQSIRIRSALTCEIQTGVCGVCYGRDL
ARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHLGGTATVVDQSFLEASYEGTAQLKNRN
MLRNSDGVLVAMGRNMTIQILDERGVERSSQRVAYGSKIYVDDGDKVRRGQRLAEWDPYT
RPIMTELAGTVQFEDVVDGLSVLEATDEATGITKRQVIDWRSTPRGSDLKPAIVIKDASG
NVAKLPRGTDARFFLSVEAILSVEPGQKVSQGDVLARSPLESAKTKDITGGLPRVAELFE
ARRPKDHAVIAEIDGTIRLGRDYKNKRRVIIEPAEDGVEPVEYLIPKGKPFHLQDGDYIE
KGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVE
ITDAGDSHYIVGDNVDRIELEDNNDRLIEEGKKPAYGDPVLLGITKASLQTPSFISAASF
QETTKVLTEAAIAGKTDGLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDELILEERRK
GSGSAVATPMLQNLNEKAPAAE
NT seq
4209 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatcttttcaatccgcaggtgcctgcacagaacttcgattca
attcgaatttccatcgcatcgccggagaagatcctctcctggtcgtacggtgagatcaag
aagccagaaaccatcaactatcgtacgttcaagcctgagcgcgatggtctgttctgcgcg
cggatcttcggaccgatcaaggactacgaatgcttgtgcggcaagtacaagcgcatgaag
tacaagggcatcatctgcgaaaagtgcggcgtcgaagtgacgctgtcacgcgttcgtcgc
gagcgcatgggccatatcgaactggcggcacccgttgcccacatctggttcctgaagtcg
ctgccatcgcgcatctcgacgttgctcgacatgacgttgaaagacgttgaacgcgtcctg
tacttcgaaaactacatcgtcactgagccaggcctgactgctctgaaggagcatcacatg
ctctcggaagaagagtacatgcttgccgttgacgaatacggcgaagaccagttcacagcg
atgatcggcgccgaagccatcttcgaattgctggcctccatggatctcgaaaagatcgct
ggcgatctgcgccaggatctcgccgacaccacgtcggacctgaagcagaagaagctgatg
aagcgtctcaagatcgttgagaacttcatggaatctggcaatcgcccggaatggatgatc
atgaagatcgttcccgtgatcccgccggacctgcgtccgctggtgccactggacggcggc
cgctttgcgacctccgacctgaacgatctctatcgccgcgttatcaaccgcaacaaccgc
ctgaagcgcctgatcgagcttcgtgcgcccggcatcatcatccgcaacgaaaagcgcatg
ctgcaggaatccgtagatgcgctgttcgacaacggccgccgcggtcgcgtcatcacgggt
gctaacaagcgtcctctgaagtcgctctccgacatgctcaagggcaagcagggccgcttc
cgccagaacctgctcggcaagcgcgtagactattcgggccgttcggttatcgtgacgggt
cctgaactgaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
ccgttcatctacgcccgtctcgacgccaagggttactcctcgaccgtcaagcaggcgaag
aagctggtcgagaaggaaaagccggaagtctgggatatcctcgacgaggtcatccgcgag
cacccggttctcctgaaccgtgcgccgacgcttcaccgtctcggcatccaggcattcgag
cccatgctggtcgaaggcaaggccatccagttgcacccgctcgtctgcacggccttcaac
gccgacttcgacggcgaccagatggctgttcacgtgccgctctcgctggaagcccagctt
gaagcacgcgtcctgatgatgtcgaccaacaacatcctgcaccctgcaaacggcgcaccg
atcatcgtgccgtcgcaggacatggttctcggcctctactatctgtcgatcatgaaccag
aacgagccgggcgaaggcatggccttctcggatcttggcgagctgcatcacgcccttgaa
aacaaggtcgtcacgctgcactccaaggtgcgtggccgcttcaagtcgattgacgaagag
ggcaagccttattcgaagatctatgaaacgacgcctggccgcatgctcatcggcgaactt
ctgccgaaggcattcaaggttccttacgaaacctgcaaccaggaaatgaccaagaagaac
atctccaagatgatcgacacggtctaccgtcactgcggccagaaggacacggtcattttc
tgcgaccgtatcatgcagctcggcttcgctcacgcctgccgcgccggcatctcgttcggc
aaggacgacatggtcattccggaaaccaaggccaagatcgtcggtgacaccgaaagcctg
gtgaaggaatacgaacagcagtacaatgacggcctgattacccaaggcgaaaagtacaac
aaggtcgtcgacgcatggggcaaggctactgaaaaggtcgctgaagacatgatggcccgg
atcaaggccgtcgagttcgacgaggccaccggtcgccagaagccgatgaacgcgatttac
atgatgtcccactccggtgcccgcggttctccgaaccagatgcgccagctgggcggcatg
cgcggcctgatggccaagccttcgggcgaaatcatcgagacgccgatcatctcgaacttc
aaggaaggcctgaccgttaacgagtacttcaactcgacccacggcgcccgcaagggtctt
gcagacaccgccctgaagacagccaactccggttacctgacgcgccgtctcgtcgacgtt
gcgcaggattgcatcgtaacgcacgtcgattgcggtacagagtcgggcctcaccatgacc
gccatcgtcgatgccggtcaggtcgttgcctccatcggtgtccgtatcctcggccgcacg
gcgctggacgatatcgatcacccggttacgggcgagcgcatcgtcgatgctggcaagatg
atcctcgagccagatgtcatcgagatcgaaaaggccggcatccagtcgatccgtattcgt
tctgcgctgacctgcgaaatccagacgggcgtttgtggcgtctgctacggccgagatctg
gcccgtggtacgccggtcaacatcggtgaagctgtcggcgtcatcgccgcgcagtcaatc
ggtgaaccaggcacccagctgaccatgcgtaccttccacttgggcggcacggcaaccgtg
gtcgaccagtcgttcctcgaagcgtcctacgaaggtacggcgcagctgaagaaccgtaac
atgttgcgcaactctgacggcgttctcgtcgccatgggccgcaacatgacgatccagatc
ctcgacgaacgcggtgtcgagcgctcctcgcagcgcgtcgcctacggttccaagatctat
gtggatgatggtgacaaggttcgtcgtggacagcgcctcgcagagtgggacccctacaca
cgtccgatcatgacggaactggccggtacggttcagttcgaagacgtcgtcgacggtctg
tctgttctggaagccaccgacgaagcgacaggcatcacaaagcgtcaggtcatcgactgg
cgttcgaccccacgcggttcggacctcaagccggcgatcgtcatcaaggacgccagcggc
aatgttgcaaagctgccccgcggtaccgatgcccgcttcttcctctcggtcgaggctatt
ctctcggtcgagccaggccagaaggtatcccagggtgacgttcttgcccgctcgccgctg
gaaagcgccaagaccaaggacattaccggcggtctgccgcgcgtcgccgaattgttcgaa
gcccgtcgtccgaaggaccacgctgtcatcgccgaaatcgatggcacgatccgtctcggc
cgcgactacaagaacaagcgtcgcgtcatcatcgagcctgcggaagacggcgtcgagcca
gtcgaatacctgatcccgaagggcaagcccttccatcttcaggacggcgactacatcgaa
aagggtgattacatcctcgacggtaacccggcaccgcacgacatcctggcgatcaagggc
gtcgaggcactcgcttcgtacctggtcaacgaaatccaggaagtctatcgtctgcagggc
gttgtcatcaacgacaagcacatcgaagtgattgttcgtcagatgctgcagaaggtggaa
atcaccgatgcgggcgacagccactatatcgtcggcgataacgtcgaccgtatcgagctg
gaagacaacaacgaccgcttgatcgaggaaggcaagaagcctgcctacggcgatccggtt
ctgctcggcatcaccaaggcgtcgctgcagacgccgtccttcatctccgccgcgtccttc
caggaaacgacgaaggtgctgacggaagctgcaatcgccggcaagaccgatggcctgcag
ggcctgaaggaaaacgtcatcgtcggccgccttatcccggccggtaccggtggtaccatg
acgcagatccgccgcatcgccacggcgcgcgacgaactgatcctcgaagagcgccgcaag
ggctccggatcggccgtcgccacgccgatgctgcagaacctcaacgaaaaggccccagcc
gccgagtaa
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integrated database retrieval system
