Rathayibacter toxicus 70137: TI83_04415
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Entry
TI83_04415 CDS
T03670
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
rtx
Rathayibacter toxicus 70137
Pathway
rtx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rtx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TI83_04415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rtx03019
]
TI83_04415
03016 Transfer RNA biogenesis [BR:
rtx03016
]
TI83_04415
Enzymes [BR:
rtx01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
TI83_04415
Messenger RNA biogenesis [BR:
rtx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TI83_04415
Transfer RNA biogenesis [BR:
rtx03016
]
Prokaryotic type
tRNA degradation factors
TI83_04415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
PNPase
S1
KH_1
KH_KhpA-B
KH-I_KHDC4-BBP
RNase_PH_C
KH_PNO1_2nd
KH_2
Motif
Other DBs
NCBI-ProteinID:
AJM77395
UniProt:
A0A0C5BGQ1
LinkDB
All DBs
Position
973449..975710
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AA seq
753 aa
AA seq
DB search
MEGPEITFAEAVLDNGSYGTRTVRFETGRLAQQAQGAVAAYLDEDTMLLSATSASKNPKD
TFDFFPLTVDVEERSYAAGKIPGSFFRREGRPSTEAILVCRLIDRPLRPSFVEGLRNEVQ
IVITVLSIAPDEFYDALAINAASASTQISGLPFSGPIAGVRLALMSDGSGRDQWIAFPKA
SQLENAVFDLTVAGQVVTAEDGSSDVAIMMVEAEATESAWKLIKAGATKPSEAVVAEGLE
AAKPFLRSLVDAQAQLSAATAKPVKDYPVFLPYTQETYDAVAELSHGELVRVYQIADKVE
RQDADDALKARVKEQIAERVASGQLPAEASNQFGAAYKAVTKLVVRSRILRDGVRIDGRG
LADIRPLDAEVQVIPRVHGSAIFQRGETQILGVTTLNMLKMEQQIDSLSPVTHKRYLHHY
NFPPYSTGETGRVGSPKRREIGHGFLAERALVPVLPGREEFPYAIRQVSEALSSNGSTSM
GSVCASTLSLLNAGVPLRAPVAGIAMGLVSDVIDGQTRYAALTDILGAEDALGDMDFKVA
GTAEFVTAIQLDTKLDGIPSSVLDAALTQAKDARTTILAVLTAAIDQPDEMAPTAPRVIS
VQIPADKIGELIGPKGKTINAIQDQTGADISIEEDGTVYIGAVDGPSAEAARAQVNAIAN
PTNPEIGEQFLGTVVKLATFGAFVSLLPGKDGLLHISEVRKLAGGKRVENVEDVLGVGQK
LLVQITKIDDRGKLSLSPVVADEVETAVSIVIE
NT seq
2262 nt
NT seq
+upstream
nt +downstream
nt
ttggaaggtcccgaaattacattcgctgaagctgttctcgataatggctcctacggcacc
cgcactgttcgctttgagactggccgcctcgcgcagcaggctcagggtgcggttgccgca
tatcttgacgaggacaccatgctcctctcggccacttcggcctcgaaaaaccctaaagac
accttcgacttcttcccactcacggttgacgtcgaggaacgctcctacgccgccggcaag
atcccgggctcgtttttccgtcgcgagggtcgcccgtcaaccgaggcaatcctggtgtgc
cgcctgatcgatcggccgcttcgcccttctttcgttgaggggctgcgcaacgaggtccag
atcgtcatcactgtgctcagcatcgcgcctgacgagttttacgacgctctcgcgatcaat
gcagcgagcgcttcgactcagatctcgggtctgccgttctcgggccccatcgcaggcgtg
cgcctcgcgctgatgtccgacggctccggccgcgaccagtggatcgccttccccaaggcc
tcccagctcgagaacgctgtctttgacctcaccgtcgctggccaggttgttaccgctgag
gatggttcctccgacgttgcgatcatgatggtggaggcggaggccaccgagtcggcctgg
aagctgattaaggcgggtgcgacaaagcccagcgaggctgtcgtcgccgagggccttgaa
gcagccaagcctttcctccgttcgctcgtcgacgcccaggcgcagctctctgccgctacg
gccaagccggtcaaggactacccggtgttcctgccctacacgcaggagacctatgacgct
gttgctgaactcagccatggtgagctcgtcagggtgtaccagattgccgacaaggtagag
cgtcaggatgccgatgacgctctcaaggcgcgggttaaggagcagattgccgagcgcgtt
gcctctggccagctcccggcggaggcgtccaaccagttcggcgctgcctacaaggcggtc
accaagttggtggttcgcagccgtatcctccgtgacggtgtgcgtatcgacggtcgcggt
ctcgccgacattcgtccgcttgacgccgaggttcaggtgataccgcgcgtgcacggctcg
gcgattttccagcgtggcgagacccagattctgggcgtcaccacgttgaacatgctcaag
atggagcagcagattgactctctgtcgccggtgactcacaaacgctacttgcatcactac
aacttcccgccctactcgaccggtgagaccggccgagtaggatcgccgaagcgtcgtgag
atcggccacggttttcttgccgagcgtgctctcgtgccggttttgcccggccgcgaggag
tttccctacgcgatccgccaggtctctgaggcactgagttccaacggctcgacctcgatg
gggtcggtctgcgcgtcgacgctgtcactactcaacgccggtgtgcccctccgcgccccg
gttgcgggaatcgcgatgggcctcgtctccgacgtaatcgatggtcagacccgctacgcg
gcactgactgacattctgggtgcggaagacgcgctaggcgacatggacttcaaggttgcc
ggtaccgccgagttcgtcaccgcgatccagctggacacgaagctcgacggcatcccctcg
tccgttctcgacgcggcgctcacacaggcgaaggatgctcgcacgacgattctcgcggtc
ctcacggcagctattgatcagcccgacgagatggctccgacggcgccccgtgtgatctcg
gtgcagattccggccgacaagatcggtgagcttatcggccccaagggcaagacgattaac
gcgatccaagaccagactggagcggacatctcgattgaggaggatggcactgtgtacatc
ggtgctgtcgatggcccttcggcagaggcggctcgtgctcaggtcaacgcgattgccaat
cccaccaatccggagattggtgagcagttcctcggaaccgtcgtcaaactcgcgaccttt
ggcgcgttcgtctcgctgcttcccggtaaagacggtctcctgcacatcagcgaggttcgt
aagcttgccggcggcaagcgtgtcgagaacgttgaggatgttctcggggtcggtcagaag
cttctcgtccagatcaccaagatcgatgatcgtggcaagctgtctctctcgcctgtggta
gccgacgaggtcgagaccgccgtctcgattgtcatcgagtag
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