Rickettsia typhi Wilmington: RT0405
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Entry
RT0405 CDS
T00193
Symbol
dnaN
Name
(GenBank) DNA nucleotidyltransferase (DNA-directed)
KO
K02338
DNA polymerase III subunit beta [EC:
2.7.7.7
]
Organism
rty
Rickettsia typhi Wilmington
Pathway
rty03030
DNA replication
rty03430
Mismatch repair
rty03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RT0405 (dnaN)
03430 Mismatch repair
RT0405 (dnaN)
03440 Homologous recombination
RT0405 (dnaN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rty03032
]
RT0405 (dnaN)
03400 DNA repair and recombination proteins [BR:
rty03400
]
RT0405 (dnaN)
Enzymes [BR:
rty01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
RT0405 (dnaN)
DNA replication proteins [BR:
rty03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
RT0405 (dnaN)
DNA repair and recombination proteins [BR:
rty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
RT0405 (dnaN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_beta
DNA_pol3_beta_2
DNA_pol3_beta_3
PCNA_C
PCNA_N
Motif
Other DBs
NCBI-ProteinID:
AAU03882
UniProt:
Q68WW0
Structure
PDB
LinkDB
All DBs
Position
516585..517730
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AA seq
381 aa
AA seq
DB search
MLKLIVETKTLVQSLGFARSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAV
QVLSEGEITVSTQTLSDIVRKLPDSELTLTELDIMKLEIKGQNCQFNLFTLPVSSFPAMD
SIKPEVSFKISCADFAKIIESTKFSISLDETRYNLNGIYLHIKDKEFFAASTDGHRLSIS
WITLEEKIKNFGVILPQKSAEEILKIVKDLKNIHEDIEILLSSNKIKFICNENTILLSKL
IDGTFPDYSAFIPKSSISKLVINRKIFADSIERIAIITVEKFRAIKLSLSRKTLEISAVG
EARGNAKEIITASQDKESFYEYNCDESLVIGFNPQYLEDVLKAVKSNLVELYFSDISASA
PVLIKFPQNPKDIFVIMPVKV
NT seq
1146 nt
NT seq
+upstream
nt +downstream
nt
atgttaaaattaatcgttgaaacgaaaacgttagtacagtccctcggttttgcaagatct
gttgttgaaaaacgtaatgtaatacctgaatatgcaaacataaaattatcagcaaaagat
ggcaatctagagcttagttctactaatatggatttgtacttaagtcaaaaaattgcagta
caggtattaagtgaaggggaaattaccgtttctacacaaactctaagtgatatagtccgc
aaactgccagattctgagcttacattaacagaactagatataatgaaacttgaaatcaaa
ggtcaaaactgtcaatttaatttatttactttacctgttagttcttttcctgcgatggat
agtattaaacctgaagtaagctttaaaatttcttgtgcggattttgctaaaataatcgaa
tcaacaaaattttcaatttctttagatgaaactcgttataatttaaatggtatttattta
cacataaaagataaagaattttttgcagcaagcactgatgggcatagactttcaatttca
tggataacattggaagaaaaaataaagaattttggagttatattacctcaaaaaagtgca
gaagaaattttaaaaatagttaaagatcttaaaaatatacatgaagacatagaaatttta
ttaagtagtaataaaattaaatttatatgtaatgaaaatactattttactgtcaaagctt
atagatgggacttttcctgattatagtgcttttattccgaaaagcagcatatcaaaatta
gtgattaatcgaaaaatatttgcagatagtatagaaaggatagcgataataaccgttgag
aaatttagagcgatcaaattatcattatctcgtaagaccttagagattagtgctgtcgga
gaagcaagaggcaacgcaaaagagattattactgcctcacaagataaagaaagtttctat
gaatataattgtgatgagtctttagtcataggctttaatccacaatacttagaagatgtt
ttaaaagcagtaaaatcgaatttagtagaattatatttctcagatatttcagcttcagca
ccagtacttattaaatttcctcaaaatcctaaagatatttttgtaatcatgcctgttaag
gtttaa
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