Rickettsia typhi Wilmington: RT0434
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Entry
RT0434 CDS
T00193
Symbol
uvrD
Name
(GenBank) DNA helicase II
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
rty
Rickettsia typhi Wilmington
Pathway
rty03420
Nucleotide excision repair
rty03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rty00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
RT0434 (uvrD)
03430 Mismatch repair
RT0434 (uvrD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rty03400
]
RT0434 (uvrD)
Enzymes [BR:
rty01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
RT0434 (uvrD)
DNA repair and recombination proteins [BR:
rty03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RT0434 (uvrD)
MMR (mismatch excision repair)
Other MMR factors
RT0434 (uvrD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
AAA_11
AAA_12
Motif
Other DBs
NCBI-ProteinID:
AAU03911
UniProt:
Q68WT1
LinkDB
All DBs
Position
547599..549575
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AA seq
658 aa
AA seq
DB search
MKDKMQNQNFMHTLNSEQKKAALHTEGPLLLLAGAGTGKTKVLTSRIANIIQQNLALPHN
ILAVTFTNKAAKEMSERVHNLINCYGVNIGTFHSMAAKILRDQIENLNLGLNNKFTIISH
DDQLTLVKDIVKLKKDIDTKKYTPKLIHIIISRWKDQGLLPSKLSASDTNLPLQRVAKLI
YEEYQKNLLISNVLDFGDLLLYNNELFIKNPEILKYYQEKYRYILIDEYQDTNIAQYLWA
RMLASLYRNICCVGDDDQSIYGWRGAEVGNILRFEKDFAGATIIKLEQNYRSTLPILAAA
SNVINNNKNRHSKTLWTDSASGEKIKIISCLSDKEEARYIACEIDKLVREERYHAGNIAI
LVRAGFQTRSFEEAFINSAMPYKIIGGLRFYERMEIRDVLAYIRISLNQNDNLALERIIN
VPKRAIGAASLNKIRSYALERNISNFVAIKEILETGIFKAKSYESLKDLLTKIDNWYEKF
ITDTPINVVKTILDDSGYLSMLQEEKTEEAFGRIENINEMLRAIAEFNDIHDFIEHSSLV
MENEVLETNYGGSVTIMTLHAAKGLEFDVVFLPGWEEGVFPSQRSLDEDGEKGLEEERRI
AYVGITRAKKDLYITHAESRKIFYEIVHSCPSRFINEIPDEITIRTSSMKKYNSFYKF
NT seq
1977 nt
NT seq
+upstream
nt +downstream
nt
atgaaagataaaatgcaaaatcaaaatttcatgcatacattaaattcagaacagaaaaaa
gcagcgcttcatactgaaggtccccttttattactagcaggtgcaggaacaggtaaaaca
aaggttcttacatcaagaatagctaatattattcagcaaaatttagccttgcctcataat
attctcgccgttacttttactaataaagctgcaaaagaaatgtctgaaagggttcataat
ttaattaattgctatggtgtgaatataggtactttccactcaatggcagctaagatatta
cgtgaccagattgagaatttaaatcttggtttaaataataaatttactataattagtcat
gatgatcaattaactttagttaaagatatagtaaagctaaaaaaagatattgatacaaaa
aaatatacacctaagttaatacatattattatttcaagatggaaggatcagggattattg
ccaagtaaattatcagcatcagatactaatttaccattacagagagtggcaaaacttata
tacgaagaatatcagaaaaatttacttatttctaatgttttagattttggagatttacta
ctttataataatgaactttttattaaaaatcccgaaatactaaaatattaccaagaaaaa
tatcgatatattttaatcgatgaatatcaagatactaacattgcccaatatttatgggca
agaatgctagcaagtttatataggaatatttgttgtgtaggagatgatgatcaatctatt
tatggttggcgaggagcagaagttggaaatatactgcgttttgaaaaagatttcgcaggc
gcaacgattattaaattagaacagaattatagatccaccttgccaatacttgctgctgct
tctaatgttatcaataataataaaaatcgtcatagtaaaacgctatggacggacagcgca
agtggtgaaaagataaaaattatctcttgtttaagtgataaagaagaagcaagatatata
gcatgtgaaatagataagttagttagagaagagaggtatcatgctggcaatattgcaata
ttagtacgcgctgggttccaaaccagaagttttgaggaagcttttataaatagtgcgatg
ccttataaaattataggcggtttacgattctatgaacgtatggaaataagagacgtactt
gcttatatccgtatatctttgaatcaaaatgataatctagcacttgaacgtattatcaat
gtgccaaaaagggcaataggtgcagctagcttaaataaaattagatcttatgcgcttgaa
cgcaatatttctaatttcgtagcaattaaagaaatactagaaacgggtatttttaaagca
aaatcatatgaatctctaaaagatttacttactaaaattgataattggtatgaaaaattt
attacagatactccaataaacgtagttaaaacaatacttgatgattccggttatctttca
atgcttcaagaagaaaaaactgaagaagcattcggtagaatcgaaaatattaatgaaatg
cttagagctattgcagaatttaatgatattcatgattttatcgaacattcaagcttagtg
atggaaaatgaagttcttgaaactaattatggtggctctgtgactataatgacactgcat
gcagctaaaggactcgaatttgatgtagtatttttacctggatgggaagaaggtgtattt
ccttctcaaagatctctagatgaagatggcgaaaaaggcttagaagaagaacgacgtatc
gcttatgttggtattacaagagcaaaaaaagatctttatattactcacgctgaaagccgg
aaaatattttatgaaatagttcactcgtgtccttcaaggttcatcaacgaaattcctgat
gagattacgattagaacatcttctatgaaaaaatacaattctttttataagttttaa
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