Rickettsia typhi Wilmington: RT0847
Help
Entry
RT0847 CDS
T00193
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
rty
Rickettsia typhi Wilmington
Brite
KEGG Orthology (KO) [BR:
rty00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
RT0847 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rty03021
]
RT0847 (rpoD)
Transcription machinery [BR:
rty03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
RT0847 (rpoD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_ner
Sigma70_r2
Sigma70_r4
Sigma70_r1_2
Sigma70_r1_1
Nrap_D6
Motif
Other DBs
NCBI-ProteinID:
AAU04301
UniProt:
Q68VQ5
LinkDB
All DBs
Position
complement(1082771..1084678)
Genome browser
AA seq
635 aa
AA seq
DB search
MSNSNIDNDPAKIDSLLRKAKSKKIPVTYDDINKALPLNKNPSIRQLEEAILKFSDAGVD
ILESNEDDEIKLDIGIDEEFKLSTNVDNESEDEVEEENIGSTDDPVRLYLKDMGGVDLLT
RENEVEIAKRIEEGRKTMTASLCRSPVAMRCFIVWYEDLVNEKMLLRDLIDLEANMLHDE
VHENDEEHNSETEVEEHEDNHLSMSRVETQILHNIIDRMKKISFICEELLIEAKKCYEES
FDPKVLQNSRKYNNNLELLIHEVSEIHFNSKRTEEILGKMYGINRDLINKETAFLKLAEK
YGVTRQNFLDEYIGSVINAAWKEKMLKNKKVAWKELITKESDYIDQMINELSVIESNTGL
LVNDFKKLVNTIQKSERQTLQAKKDMIEANLRLVISIAKKYANRGLQFLDLIQEGNIGLM
KAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKILRTSRQMLNE
LGYEPTATEIANRLSMPLDKVRKVMKIAKEPISLENPVGDDSDGGQLGDFIEDKNAVAPI
DAAIQSNLREVTTRVLATLTPREERVLRMRFGIGMNTDHTLEEVGQQFKVTRERIRQIES
KALRKLQHPIRSKKLNSFRNGGKRGDGNPSDLLEA
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatagcaatatagacaatgatccagcgaaaatagatagtttacttagaaaagct
aaatctaaaaagataccggtcacttatgatgatataaacaaagctctccctcttaataaa
aatccttcaataaggcaattagaagaagctatattaaaattttctgatgcaggagtagat
attttagaatctaatgaagatgatgaaattaagcttgatatcggaattgatgaagaattt
aagctatctactaatgttgataatgaatctgaggatgaagtagaggaagaaaatataggt
agtactgatgaccctgtgagattatatcttaaggatatgggaggtgttgatcttttaact
cgtgaaaatgaagtagaaatagcaaaaaggattgaggagggacgcaaaacaatgactgct
tccttatgcagaagccctgttgctatgcgttgttttatagtatggtatgaagatttagtt
aatgaaaaaatgttactacgtgatctgatcgatttagaagctaacatgttacatgatgaa
gtgcacgaaaatgatgaagaacataatagtgaaactgaagtagaagagcatgaggataat
cacttatctatgtctagagtagaaacgcaaatattgcataatataatagatcgtatgaaa
aagatttcttttatatgtgaagagctgctcattgaagctaagaaatgttatgaagaatct
tttgatccgaaagttttgcaaaatagtagaaaatataataataatttagagttattaata
catgaggtttcggaaatacattttaattctaaaagaacggaagagattttaggtaaaatg
tatggaataaatcgtgatttaattaataaagaaacagcttttttaaaacttgctgaaaaa
tacggagtcacacgtcaaaatttccttgatgagtatataggatcggttatcaatgcagca
tggaaagaaaaaatgctcaaaaataaaaaagttgcttggaaagagttaattactaaagaa
tcagattatatagatcaaatgattaatgaattatcagttatagaatctaatactggtctt
ttagttaatgattttaaaaaactagtaaatactatacaaaaaagtgagagacaaacgctg
caagcaaaaaaagatatgatagaagcaaatttgcgtttagttatatcgattgcgaaaaaa
tatgctaatagaggcctacagtttttagatttaatccaagaaggtaatataggacttatg
aaagcagtagataaatttgaatatcgtcgcggttataaattttctacttatgccacttgg
tggattagacaagctataacaagagcaattgcagatcaagcaaggactatacgtattcct
gtgcatatgattgaaacaattaataagatacttcgtacttcaagacaaatgcttaatgag
cttggatatgaaccaacagcaacagaaattgctaaccgtctttcaatgccacttgataaa
gtgcgtaaagttatgaaaatagctaaagaacctataagtcttgagaatccagtgggtgat
gatagtgatggtggtcaattaggtgattttatcgaagataagaatgcagtagcaccgatt
gatgcagcaattcagtcaaatttacgagaagttaccactagagtacttgcgacactcacg
cctcgtgaagaaagagtactgagaatgcgtttcggtataggtatgaatactgaccataca
ttagaagaagtaggacaacaatttaaagtaactagagaacgtataagacaaattgagtca
aaggctttaagaaagttacaacatcccattagatcaaaaaaacttaatagttttagaaac
ggtggaaaacgtggtgatggtaatccatcagatttactagaagcatga
DBGET
integrated database retrieval system
