Ruegeria sp. AD91A: D1823_00815
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Entry
D1823_00815 CDS
T05627
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rua
Ruegeria sp. AD91A
Pathway
rua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1823_00815
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rua03019
]
D1823_00815
03400 DNA repair and recombination proteins [BR:
rua03400
]
D1823_00815
Enzymes [BR:
rua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
D1823_00815
Messenger RNA biogenesis [BR:
rua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
D1823_00815
DNA repair and recombination proteins [BR:
rua03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
D1823_00815
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
DEAD
AAA_19
Helicase_C
UvrD_C
UvrD_C_2
ResIII
Viral_helicase1
AAA_11
SLFN-g3_helicase
Motif
Other DBs
NCBI-ProteinID:
AXT25267
LinkDB
All DBs
Position
163069..168180
Genome browser
AA seq
1703 aa
AA seq
DB search
MPREQSEISSRCLSIDLEVDPKEAKLFAFAAVPEGDGEGIIHRKGDPKAALEKLDLFCAG
FAHVIGHNILRHDLPHLMAVSPRFAKLADGPIDTLWLNPLAFPRNPYHHLVKHYRDGRLQ
SGHVNDPELDARLVFEVLHNQIDAFVSLNTLSPETMIAYHWLCCRGPSSVGFDRLFSDVR
GAPIPTEAEAHEAIQALLKDVACGRQVDALLERLSDTGLGWPMAYALAWISVAGGDSVMP
PWVRAQFRDAARLVKDLRDTNCRDPNCAYCAEHNEPTRALERWFGFPSFRPEPVDENGRP
LQEKIVATAMEGDNLLGILPTGTGKSICYQIPALSRFDKTGALTVVISPLVALMADQVQG
LVRAGISSAVTINGLLSLPERQDALDKVRLGDAAILLISPEQLRSTTVRSVLAQREVGLW
VLDEAHCVSKWGHDFRPDYRYVSRFIKESSGDEPAPVLCLTATAKPDVVQDIRSHFKERL
GSELVLIDGGASRSNLSFQVLPTQRATKMADILDTIEVKLPREGVSGAVVYCATQNATER
VAEFLKQQGIAAERYHAGLSPDDKREIQEDFRVGNLRVIAATNAFGMGVDKPDIRLVVHG
DVPGSLENYLQEAGRAGRDREPANCILLFNTEDVDRQFSLSARSRLARHEIGAILKALRR
LDARTGKGGEIVATPGEIVHEEKERDFQRDSNTDDTRVKTAVAWLEEAHLLNREENRVQV
FPASLRIRSMREVREILASAEITERRRKDLAVIVQHIINAPQEEGITTDELCGVSGLTMS
SLRKALADLEALGIAKDDTNITIFVHVGVENASSKRFEAASRLEADLIAVLREQAPDADI
NEAAPCHLASVAQALRERGHASVRPDIVEGLLRGMAQDGRDMDGGKGNIGLRKVSKGSVM
VRIQRSWGVIEQTAQLRRQAAERLVSHLINKAQAGLRRKDVPVETTLGDLLAAINSDALL
RASVNDPAKLMDRALLWLHEQQVMTLGKGLSVFRSAMTLHINPKGGAFTTQHFAPLEDHY
TEQTVQTHVMAAYASKGIDDIDQAQQLAHDYFEMEQSDFMKAWMPGKISEFRRQATPQSY
AEIVDNLGNATQEQIVRDDREQTNVLVLAGPGSGKTRVLVHRIAYLVRIKREDPNGILVL
AYNRHAAAEIRERLRMLIGEDARFVTVLTIHALAMRLVGASFAGRVAADEPDFETLLIDA
ARLLRGDGLDKIEAEALRETLIQGFRWILVDEYQDVGPEEYALIAAVAGRSIDDPDQRIS
LFAVGDDDQNIYAFAGASVRHIRQFEQDYSAKPVFLTDNYRSSKNVISAANAVIEGSRER
MKTGHGITVDKSRQKDPAGSIMESLDPVAQGRVQILGCPAGNDAQALAAVNEMIRLSKLI
PDWSWKGAAIISRDWRKLLSVRDFAEAHGIPVEMANENLPSVWRTREMRRFIDGLRERHA
ALVSLSDLTETLNTIPSSRWTDRIGEGLGQLAREVDGKALPSPDVMEWFAEWSKDSWGEQ
RGLKLLTAHRAKGLEFDDVVILDGGWERPSRNEDQDAPRRLFYVAMTRTRRNLIVMSNDN
HEYLPTESPSVVKRHVVPDLATVPGPRRFFQSPEMKMVDLSFAGRQGDRHIVHDAIAEAQ
VGAPIKLASVGDRWQIEDIQGRVLGRMAKAFTPPIGTKFVTGEIAAIIHWRKEDADERFH
HLMKRANWEVVVPELVFEEVKSG
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atgccacgggaacaatccgaaatctcgtcgcgctgtctgtcgattgatttggaagttgat
cccaaggaagccaagttgtttgcctttgcagccgtgccggaaggcgatggagaggggatt
attcatcggaaaggtgatccgaaggccgcgcttgaaaagctcgacttgttttgcgccggt
ttcgcacatgtcattggtcacaacattctgcgccatgacctgccgcatctcatggcggtc
tcgccgcgcttcgcaaagctcgcggacggaccgattgacacgctgtggctcaaccccttg
gcgttcccgcgcaatccctaccatcatttggtcaagcactaccgcgatgggcggcttcaa
agtggtcacgtcaacgatcccgagctcgacgcgcgtcttgtgttcgaggttcttcacaac
cagatcgacgccttcgtctcgctgaacacgttgtcgccagaaacgatgatcgcctatcac
tggctgtgctgccgaggtcccagtagcgtcggatttgatcggttgttcagcgacgtgcgc
ggggcgcccatcccgacggaagcggaggcgcacgaggccattcaggcgttgctaaaagac
gtggcctgtggcaggcaagtggacgctctgctcgagcggctctcggacactggactgggt
tggccgatggcatatgcgctcgcttggatttcggtcgctggtggggattctgtcatgccg
ccttgggtgcgggcgcagttccgtgatgcagcgcggcttgtcaaagacctgagagataca
aattgtcgtgatccgaactgtgcctattgcgcagagcacaatgagcccacccgtgcactc
gaacgttggttcggctttccaagtttccgcccggaaccagtcgacgaaaacggacgcccg
cttcaagaaaagattgtggcgacggccatggaaggcgacaatttgttgggtatcctgccg
acgggcactggtaaatccatctgttaccagatccccgcgttgtctcggttcgacaagacc
ggggccttgaccgtcgtaatatcgccgcttgtagcactgatggcagaccaggttcagggc
ttggtacgggccggaatttcctcagcggttacgattaacgggttattgtctttgcccgag
cgtcaggatgcgctcgacaaggtgcggcttggggatgctgcgatccttttgatttcgccc
gaacaactgcgcagcacaacagttcggtctgttctggcacagcgcgaggtgggactttgg
gtactggacgaggcgcactgcgtgtctaaatggggacacgatttccgacccgactatcgc
tacgtttcgcggtttatcaaggaaagctcaggcgacgaaccggctccggtgctttgcttg
accgcgacagcgaagccggacgtcgtgcaggacatccgcagtcatttcaaagagcggttg
gggtccgagctggtgttgatcgacggaggcgcatcacggtcgaacctgagtttccaggtg
ctgccaacgcagcgggcaaccaagatggccgatatcctcgacacgatcgaggtcaagctt
ccgcgtgagggcgtgtcgggagcggtcgtctattgtgcgacccaaaacgctaccgagcgc
gtggcggagttcttaaaacaacagggcatcgccgctgaacggtatcacgcaggcctcagc
cccgatgacaaacgtgagattcaggaggacttccgcgtcggcaatctccgcgtgatcgca
gccaccaacgcctttgggatgggggtcgacaagccggacatccgtctggtggttcacggg
gacgtgcctgggtcgttggaaaactacctgcaagaggcgggtcgcgccgggcgggaccgc
gagcccgcaaactgcatcctgttgttcaataccgaagacgttgatcgtcagttcagcctc
agcgcgcgttctcgactcgcgcggcacgaaatcggcgcgatcctgaaggcgcttcgacgc
cttgatgctcggactggaaaaggcggcgaaattgtcgcaacacccggtgagatcgttcat
gaggagaaagagcgagacttccagcgggacagcaacaccgacgatacgcgggtgaagacg
gccgtcgcctggttggaagaagcacaccttctgaaccgcgaagaaaaccgggtgcaggtg
tttcccgcctcgctccgaataaggagcatgcgggaggtccgtgaaatcctggcatccgcc
gagattaccgagcggcggcgcaaggatctggccgtaatcgtgcagcatatcatcaacgcg
ccgcaggaagagggcatcaccacggacgagctctgcggcgtcagcgggcttacgatgtcg
agcctacgtaaagccttggcggatctcgaggccctggggatcgcaaaggacgacacaaac
atcaccatcttcgtgcatgtaggcgtcgagaatgcctcgtcgaagcgcttcgaagcggca
tcccggttggaagctgacctgattgcagtccttagggagcaagcgccagacgcggacatc
aatgaggctgcgccctgccatctggcctcagtggcgcaggccttgcgggagcggggacac
gcctccgtacggcccgatattgtcgagggtttgctccgtgggatggcgcaggatggccgc
gacatggacggcggaaaaggcaacattggcctgcgcaaggtgtccaaaggcagtgtcatg
gtgcgaatccaaagatcatggggggtaatcgaacagaccgctcaacttcgcaggcaggcc
gcagagcgtttggtttcacacttgataaacaaggctcaggcaggtctgcgtcggaaagac
gttcctgtcgagaccacgcttggcgaccttcttgcagcgatcaacagcgatgcgctgttg
cgagcatctgtcaatgatccagcaaaacttatggaccgggcgcttctttggctgcacgaa
cagcaggtgatgactctgggcaagggattgtccgtgttccgatccgccatgacgctgcac
atcaatccgaaaggcggcgcttttaccacccaacatttcgcgccgctcgaagaccattac
accgaacagaccgtccagacccacgtgatggcggcttacgcgagcaagggcatcgacgat
atcgatcaggcccagcagctcgcgcatgactatttcgaaatggagcagtccgacttcatg
aaagcttggatgccggggaagatttcagagttccgacggcaggcaacgcctcagtcttac
gccgagatcgtcgacaatctggggaatgcgacacaagagcagatcgtgcgtgacgaccgc
gaacagaccaatgtccttgtgctcgcagggccgggatcgggcaagacacgcgtgttggtc
catcgcatcgcctatctggttaggatcaagcgcgaagatccaaacggtatactggtgctc
gcctacaatcgtcacgcggccgccgagattcgggaacgcttgcgtatgctgattggcgaa
gatgctcgcttcgtcacagtcttaaccatccatgccttagccatgcggttggttggcgcg
agtttcgccggacgggtagcggccgacgaacctgatttcgagacgcttctgattgatgcg
gcacgtctcttgcgtggcgacgggttggacaaaatcgaggccgaagccttgcgagagact
ttgatccaggggttccgctggattctcgtagacgaatatcaggacgtgggaccagaggaa
tacgccttgatcgcggcggtggccggtcgcagtatcgacgaccccgatcaacggattagc
ctgttcgcggtcggcgatgacgaccaaaatatctacgcgtttgccggcgcatcggtgcgc
cacatccggcaattcgaacaggattattcagccaagccggtctttctgactgacaattac
cgctcgtcgaaaaacgtcatcagcgcagcgaacgccgtgatcgaaggatctcgggaacgt
atgaaaacagggcatgggattaccgtcgacaaatcgcggcaaaaggaccccgcagggagt
atcatggaaagcctcgatccggttgcgcagggacgggtccaaatccttggctgcccggcc
ggaaatgacgctcaggcccttgcggctgtcaacgagatgatccgcctgtcaaaactgatc
ccggattggagctggaagggcgcggcaatcatttctcgtgattggcgcaagcttctgtcg
gtccgtgattttgccgaggcgcatggaattccagtcgaaatggcgaacgaaaacttacca
agtgtttggcgcacccgtgagatgcggaggttcatcgacggcctacgcgagaggcacgca
gccttggtcagtttgagcgaccttaccgaaaccctgaacacgataccctcaagccgttgg
actgaccgtatcggcgagggacttggccaacttgcgcgtgaagttgatggcaaagcgctc
ccgagccctgacgtgatggaatggtttgctgaatggtcgaaagactcatggggcgagcag
cgtggcctcaagttgttgacggcgcatcgcgcgaaaggcctcgaattcgacgatgtcgtg
atcctggatggtggttgggaacggccctcgcgaaacgaagatcaggacgcgccgaggcgt
ttgttctatgtcgccatgacacgtacgcggcgcaatttgatcgtcatgagtaacgacaat
cacgaataccttcccaccgagtcgccttccgtcgtcaagcggcacgtggtgcccgacttg
gcgacagtccctggcccgcgccggttctttcaatcgccagaaatgaagatggtcgacttg
tcgttcgcagggcgccaaggtgatcggcacattgttcatgacgcgatcgctgaagcgcag
gttggcgcgccaatcaagctcgccagtgttggagatcgctggcagatcgaggatattcaa
gggcgggtcctcgggcggatggcaaaagcatttacgcccccgattggcacgaaatttgtc
accggcgagatcgcggccatcatacactggcgtaaggaagatgccgatgagcgttttcat
cacctgatgaaacgcgccaattgggaagtcgtggtgcctgaactggtattcgaagaggtc
aaaagcggctga
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integrated database retrieval system
