Ruegeria sp. AD91A: D1823_05885
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Entry
D1823_05885 CDS
T05627
Name
(GenBank) Rne/Rng family ribonuclease
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
rua
Ruegeria sp. AD91A
Pathway
rua03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rua00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D1823_05885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rua03019
]
D1823_05885
03009 Ribosome biogenesis [BR:
rua03009
]
D1823_05885
Enzymes [BR:
rua01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D1823_05885
Messenger RNA biogenesis [BR:
rua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D1823_05885
Ribosome biogenesis [BR:
rua03009
]
Prokaryotic type
rRNA processing factors
D1823_05885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
AXT26143
UniProt:
A0A346SFI0
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All DBs
Position
complement(1161397..1164264)
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AA seq
955 aa
AA seq
DB search
MAKKMLIDATHAEETRVVVVDGNKVEEFDFESENKRQLAGNIYLAKVTRVEPSLQAAFVD
YGGNRHGFLAFSEIHPDYYQIPVADREALMEEERAYAEAMKARDEAEEAKPKKRRSRTRS
KAADVKSDDPVESMEVSTEPSGMETIDLDEGDDSNGDVPEGTSPMEVVAETPVEEPDGDD
ALAAEEAAVAASDEDALDVAEVVTEQAVEASENDADEQAKEAVEPEEAVQSEGDETQSES
EQTEEPVDATEHQQDSDEDGNDTLNADAASKDASIETVADEDDSEDIRPPRKPRPRRYKI
QEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAPDRK
KLKEIAAEIDVPTGAGLIIRTAGAKRTKSEIKRDYEYLQRMWEQIRELTLKSIAPAKIYE
EGDLIKRSIRDLYNRDIDEVLVEGEGGYRIAKDFMKMIMPSHAKNVKRYEDALPLFARYQ
VESYLAGMFNPTVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAEEV
ARQLRLRDLAGLIVIDFIDMDERKNNAAVEKRMKERLKTDRARIQVGRISGFGLMEMSRQ
RLRPGMIEATTQPCPACHGTGLIRSDDNMALSILRQIEEEGTRRRSREVLVRCPVSIANF
LMNQKREHIAQIEARYGLSVRIEGDIHLVSPEFSMEKFKTASRIVPEATAPVVSVDASLM
DLVDSSDEEEAEEEIAQTEEETKPKRKRRRRRRKKGSGNGDTQEQSAEEDETPAQEDAES
DASDVENAESAEAEASEEEKPAKPKRKRAPRRRKKDVTAEEATNQSEETTAIAVEAVAEE
SATEEARESIEGEGVEVSADQVEVTAESVEAEPDSSLPTEQSVNGTDMAHAAEQTDESEE
PSMEAVEASEVKDADDPVDDAPVAATPEPVLEAVAEEPDPVSTKPKRRGWWSLGS
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggctaagaaaatgcttatcgatgccacccacgcggaagaaacccgcgtcgtggtggtg
gacggaaacaaggtcgaggagttcgattttgagtccgaaaacaaacgccagcttgctggc
aacatctatcttgcaaaagtaacacgggttgagccgtcactgcaggcggcttttgtggat
tatggcgggaaccggcatggtttcctggcgttttccgaaattcatccggactattaccag
atccccgttgctgaccgcgaggcgctgatggaggaagagcgcgcctatgccgaggcaatg
aaggcgcgcgatgaggctgaagaggccaaacccaagaagcggcgttcccggacacgttca
aaggccgcggatgtgaaatccgacgatccggtcgaatcgatggaggtgtcgacggaacca
tccggcatggaaaccattgatttggatgagggtgacgattccaacggagacgtgcccgag
ggtacctcgccgatggaagtcgtcgctgaaactccggtagaggagccagatggtgacgac
gcgctggcggccgaagaagcggctgtagccgcatcggatgaggacgcgttagacgttgcc
gaggttgtcacggaacaggctgtcgaggcgtcggaaaacgacgcagacgaacaagccaaa
gaggctgtggaacccgaagaagcagttcaatcggaaggggatgaaacccaatctgaatcg
gagcaaacagaagaacctgttgacgctactgagcatcaacaggactccgatgaggacggc
aacgatacgctgaacgctgacgctgcttcaaaagacgcttcgattgaaacggtagctgat
gaggatgacagcgaagacattcgtccgccgcgcaaaccgcgcccgcgtcgctacaagata
caggaagtcatcaaagtacgtcaggtcctgctggttcaggtcgtcaaggaagagcgtggc
aacaagggtgccgctctgaccacgtatttgtcgctggccggtcgctattgcgttttgatg
ccgaacacggcgcgcggcggcggcatcagccgtaagatcaccaatgcgccggaccgtaaa
aaactgaaagagattgctgcggaaattgatgtgcctaccggggctggtctgatcattcgg
actgcaggggccaaacgcaccaaatccgagatcaagcgcgactatgaatacctgcagcgc
atgtgggaacagatccgcgaactgacgctgaaatccattgcgcccgcgaaaatctatgag
gaaggcgacctgatcaaacggtcgatccgtgatctttataaccgcgatatcgacgaggtt
ctggttgaaggcgagggcggataccgcatcgccaaggatttcatgaagatgatcatgccg
tctcacgccaagaacgtgaaacggtatgaggatgcgctgccgctgttcgcgcgctatcag
gtggaaagctatctggcggggatgttcaacccgaccgtacagttgaaatccggtggctat
atcgtgatcggcgtgactgaagcactggtggcgatcgacgtgaactcgggccgtgccacg
aaggaagggtcgatcgaggaaaccgcactcaagaccaaccttgaggctgcagaggaggtt
gcacggcagttgcgtctgcgcgatctggccggtcttatcgtgatcgacttcatcgatatg
gatgagcgcaagaataatgcggccgttgaaaagcgtatgaaagagcggttgaaaaccgac
cgtgcgcgcatccaagtgggtcgtatttcgggctttggcttgatggaaatgagccgtcag
cgcctgcgccccggtatgatcgaggcaacgacacagccttgccctgcgtgtcatggcacc
ggcctgatccgctcggacgacaacatggctttgtctatcctgcgtcaaattgaagaagaa
ggtacccgtcgacgttcgcgcgaagtgttagtacgctgcccggttagcatcgccaacttc
cttatgaaccagaaacgggaacatattgcgcagattgaggcgcggtacggcctgtcggta
aggatcgaaggggatattcatctggtcagcccggaattctcgatggagaaattcaagacg
gccagcaggatcgttcccgaggccacggcgcctgtcgtgtcggtcgatgcgtcgctgatg
gatcttgtcgattcctctgacgaggaagaggctgaagaggaaatcgctcagaccgaagaa
gagacaaaacccaagcgcaaacgccgtcgccgccgccgcaaaaagggctcgggcaatggc
gacacgcaggagcagagcgcggaagaggacgaaacgcctgcacaagaagacgcagagagc
gatgcttctgacgttgaaaatgctgaatcggctgaagctgaagcttcggaggaagagaag
cctgccaagcccaagcgcaaacgtgctccacgtcggcgtaagaaagacgtaacagcggaa
gaagctacaaatcagtctgaagaaacaactgccattgcggttgaagctgttgcagaagaa
tcagcgaccgaagaagctcgcgagagcattgagggtgaaggcgttgaggtctcagcggat
caggttgaggtgaccgctgaatctgtcgaagcggaacctgattcgtcgttgccaacagag
caatctgtaaacggcacggatatggcgcatgcggcggaacagaccgatgagtcagaagag
ccatctatggaagctgtggaagcatccgaggtaaaagatgccgacgatcccgtcgatgac
gcgccagtagcagctacgcccgagccggtgctggaagccgtcgcggaagaacctgaccct
gtatcaactaagcctaaacggcgcggttggtggtcgctgggaagttga
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