Ruegeria sp. AD91A: D1823_09340
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Entry
D1823_09340 CDS
T05627
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rua
Ruegeria sp. AD91A
Brite
KEGG Orthology (KO) [BR:
rua00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rua03019
]
D1823_09340 (hrpB)
Enzymes [BR:
rua01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
D1823_09340 (hrpB)
Messenger RNA biogenesis [BR:
rua03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
D1823_09340 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
HA2_N
ResIII
AAA_19
AAA_30
wHTH-PRTase_assc
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
AXT26772
UniProt:
A0A346SHA9
LinkDB
All DBs
Position
1866822..1869275
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AA seq
817 aa
AA seq
DB search
MTIRLPIDDAIPELLDTLRAHGRAVLQAPPGAGKTTRVPLAMLEASLCDGRIVMLEPRRL
AARAAAERMAETLGERAGQTVGYRVRGDAKVSKDTRIEVVTEGILTRMLQSEPDLSGISA
VIFDEFHERSLNADLGLALCLEVTGALRDDLILLAMSATLDADPVGALMAAPLVTSDGRS
FPVETRWLDRPLGPQARRLDALIDLVSQAERETRKSGGGILVFLPGEGEIRRAEGALNSR
LPNSCVVRPLFGAMPFAAQRAAIAPVEHGRKVVLATSIAETSLTIPDIKVVVDMGQVRRA
RFDPGSGMSRLVTERVTRAEATQRAGRAGRVAEGVCYRLWSKGEDGALAAYPPAEIEAAD
LTGLALELSLWGAGAADLAFLTPPPEGTMAEARALLTMLGALDANGRITDHGRALAALPL
HPRLGHMLVRAGPNAAPLAALMAERDPLRGAPVDITLRQEALRDPRTFQRNRIWQVNMGA
VDRINAETKRLRKQAKGDSADLSPAAMAALAYPDRIGQRRKGDAPRYVLSGGKGVVLDSA
DPLANAPFLVVIDTDGNPREAKVRMATQISERETRDLFADQIDWVETCAWSKRERRVVSR
WQERFGAITLDDRIWKDVPDDAVARAMLDGVRDLGLRLEGAAARLAARVELVRADGVDLP
DFSVAGLMAEMDEWLLPMLSGVKSAEDWKKFDLMPALRARLDWAQTQELDRRAPGSFETP
LGRKVPIDYSAAVPEISVRLQEVFGVTRHPAIGGQPLKITLLSPAQRPIQITRDLPGFWA
GSYADVRKDMRAQYPKHPWPEDPTRADPTLRAKRRRE
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgacgatacgcctgcccatcgacgacgccattcccgaactgctagacactttacgtgcg
catggtcgcgcggtgcttcaggcaccacccggggcgggcaagaccacgcgggttcctctg
gcaatgctcgaggcaagtctgtgtgacggcaggatcgtgatgctggagccccggcggctg
gcggcccgggccgctgccgagcggatggccgagaccctgggagagcgcgcagggcagacc
gtgggttaccgtgtgcgcggcgatgcgaaagtgtcaaaagacacccggatcgaagtggta
accgaaggcatcctgacgcggatgctgcaatccgaacccgacctgtccggcatcagcgcg
gtgattttcgacgaattccatgaacggtctctgaacgccgatctggggctagccttgtgc
cttgaggtaacgggcgcactgcgagacgatctgatcctgctggccatgtcagccacgctg
gatgcagatcccgtcggcgcgttgatggcggccccgctggtcacatcagacgggcgcagc
tttccggttgagacgcgctggctggatcggccattgggaccgcaagcgcgacggttggat
gcgttgatcgatctggtgtctcaggccgagcgtgagacgcgcaagtccggcggcggaatt
ctggttttcctgccgggagagggcgaaattcggcgcgctgagggcgctttgaacagtcga
ttacccaatagttgcgtggtgcgcccgttattcggggccatgccctttgcggcccagcgt
gcggcgatcgccccggtggaacatgggcgcaaagttgtgctggcgacgtcgattgccgaa
acgtcgctgacgatccccgatatcaaggttgtcgtggacatggggcaggtccgacgggct
cggttcgatccgggatcgggaatgtcacggctggtgaccgaacgggtgacacgggccgag
gccacacagcgcgcgggccgggccggacgtgtcgccgaaggggtgtgttaccggctctgg
tcgaagggggaagacggtgcgctggccgcctacccgcctgccgagatcgaagcggctgac
ctgaccgggctggcgctggagctgtccctgtggggcgctggcgcggccgatcttgccttt
ctgactccacctcccgaagggacgatggccgaggcgcgggctttgctgacaatgctgggc
gcactcgacgccaatgggcggatcactgatcatgggcgcgccctggcagcactgcccttg
catccacggttggggcatatgcttgtgcgggccggtccgaacgccgcacctttggcggcg
ttgatggcagagcgtgacccccttcgcggtgcgccggtggatatcaccctgcggcaagag
gcgctgcgtgatccacggacttttcagcgcaacaggatctggcaggtcaacatgggcgcc
gtggatcggatcaatgccgagaccaaacggttgcggaaacaggccaagggcgactctgct
gatctgagccctgccgccatggctgcgctggcgtatcctgaccgcatcgggcagcggcgc
aaaggtgacgcgccgcgctatgtactgtcagggggaaaaggtgttgttctggacagtgcg
gatccactggccaacgctccgtttctggtcgtcatcgacactgatggcaatccgcgcgag
gctaaggtccggatggccacccagatttcggaacgcgagacccgcgatctgttcgcggat
cagatcgattgggttgagacttgcgcctggtcgaaacgcgagcggcgggtcgtgtcgcgg
tggcaagagcggttcggcgcgatcacgctggatgaccgcatctggaaggacgttccagac
gacgccgtggcgcgcgcgatgttggacggggtccgcgatctgggcttgcggctggagggt
gccgccgcgcgtttagccgcccgtgtcgaactggtgcgtgccgatggcgtcgatctgccc
gatttttcggtcgcaggcctgatggccgagatggacgaatggttgctgcccatgctgtca
ggtgtcaaaagcgccgaagactggaagaagttcgaccttatgcccgccctgcgcgcgcgg
ctggactgggcacagacgcaggaactggaccggcgcgctccggggtcatttgaaacgccg
ctggggcgcaaggtaccaattgattacagcgctgccgtgcctgaaatctcggtccgcttg
caggaagtgtttggcgtgacccgccatccggcaatcggcggccagcctttgaagatcacc
ctgctgtcaccagcacagcgcccgatccagataacgcgcgacctgcccggtttctgggcg
ggctcttacgcggatgtacgcaaggacatgagggcgcaataccccaaacacccctggccc
gaagatccgacccgggctgatcccacgctgagagcgaagcgcagacgggaatag
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