Ruminococcus sp. FMB-CY1: LCN94_04095
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Entry
LCN94_04095 CDS
T10118
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ruc Ruminococcus sp. FMB-CY1
Pathway
ruc03410
Base excision repair
ruc03430
Mismatch repair
ruc03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ruc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
LCN94_04095 (recJ)
03430 Mismatch repair
LCN94_04095 (recJ)
03440 Homologous recombination
LCN94_04095 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ruc03400
]
LCN94_04095 (recJ)
DNA repair and recombination proteins [BR:
ruc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
LCN94_04095 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
LCN94_04095 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LCN94_04095 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
ssDNA-exonuc_C
RNA_pol_RpbG
PDDEXK_11
Motif
Other DBs
NCBI-ProteinID:
WBX58295
LinkDB
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Position
815122..817164
Genome browser
AA seq
680 aa
AA seq
DB search
MKNWIVSEINKDEAKRIQTEYGLPPILAMLLQIRGITKREEIEDFLQNDSVIASPFEIKD
MKKGADRILSAIDNDELICVYGDYDADGVTSTALLYSYLETVGANAMYYIPSRETEGYGM
NKGAIDILAEKGVKLIVTVDNGIAAVEEIDYANSLGIDTVITDHHQPTGKIPNAVAVIDM
HQSDCPSKYKMLSGVGVAFKLVMALEGENCDVSSLLDNYSDLLCIGTVGDIVELKSENRV
FVKRGLVNIQESDRAGINALIETAGIAGKKITSGNVSFTLVPRINAVGRLGFSGKSVSLL
LTDDENEAMSIAKQLNEDNNERKEIEKNILMKIDEMVKANPHITNDRVLVIDGEGWHQGV
IGIVAAKVKEFFGKPTVIISRDGDEAKGSGRSVEGFSLCDAVFACSDLLTHCGGHPMAAG
LSLKSKNIELFRQRINEYALKQENMPFNACNIDCRLNPALISVQLVEPLAYLAPYGAGNP
TPLVGLYKMTLSQITPLSQNKHLRLQFKRNNSTVSVMNFFTTQQEFPYKVGDVLDLAVTL
DINEFNGQRNVSIILKEIKPSVLDTKDFLQSQRNYEDFKLGLNLTNAQITDLLPTREDFA
ILYVFLRKSGGYAYPIETLVHKLDYKLSIGKIRIILDAMSELSLIEVIEGINSAQIRVSE
VSQKVDLNSADTVIKLRGMQ
NT seq
2043 nt
NT seq
+upstream
nt +downstream
nt
ttgaagaattggatagtatccgaaatcaacaaggatgaagcaaaaagaatacaaacagaa
tacggattacctccaatacttgcaatgttgttgcagatcagaggcattacaaaaagagag
gaaatcgaggattttttgcagaacgacagcgttattgcatcaccttttgaaattaaagat
atgaaaaaaggtgctgacagaattttatctgcaattgacaatgatgagcttatatgcgtt
tacggagattacgatgcggacggcgtcacttctacggcacttttgtactcttatcttgaa
acggtcggtgcaaacgctatgtattatattccgtcaagagaaacagaaggttacggaatg
aataaaggcgcaatcgatattctcgctgaaaagggagtaaagttgattgttaccgtcgat
aacggaatagccgctgtggaagaaattgattacgcaaactctcttggtattgacactgta
attactgatcaccaccaaccgacgggaaaaatacccaatgctgttgcggtaatcgatatg
catcaatccgactgtccgagtaagtacaaaatgctttcgggtgtcggtgtagcctttaaa
ttggttatggcgcttgagggcgaaaactgcgatgtatcgtccctgcttgacaattactct
gacctgctctgtataggaacagtcggagatattgtggaattaaaaagcgaaaacagagtg
tttgtcaagcgtggacttgttaatattcaggaaagcgacagagcaggtattaatgctctt
attgaaaccgcaggaattgccggcaaaaagattacttcgggcaatgtatcatttacactt
gttccgagaataaatgcggtcggtaggctcggcttttcgggaaaatcggtttcactgctg
ctgaccgatgatgaaaacgaggcaatgagtattgcaaaacagcttaatgaagataacaac
gagcgtaaggaaatcgaaaaaaatatattaatgaagattgacgaaatggtcaaagcaaat
cctcatattacaaatgaccgtgtgcttgttatcgacggcgagggttggcatcagggtgtt
atcggaatcgtggcggcaaaggtcaaagaatttttcggtaagcctactgttattatttcc
cgtgacggagacgaggcaaagggctcgggcagaagtgttgagggattttccctttgtgat
gcggtttttgcctgctcggatttacttacacattgcggcggtcaccctatggcggcagga
ctttcactaaaaagcaaaaatattgaattgttccgccaaagaattaacgaatatgccctt
aagcaggaaaatatgccgtttaatgcgtgtaatattgactgcaggttaaatcctgcttta
ataagcgttcagcttgttgaaccgcttgcgtatcttgctccttacggtgcgggtaatcct
acaccgcttgtcgggttgtataaaatgactctttcacagattactccgctgtcacaaaat
aagcatttaaggctgcagtttaaacgcaataattcgacagtatcggttatgaatttcttt
accacgcaacaggaatttccttataaagtaggagatgtacttgaccttgcggttacgctc
gatataaacgaatttaacggtcaacgcaatgtttccataatattaaaggaaataaaaccg
tcagtgcttgataccaaagacttcttgcaaagtcagaggaactacgaagattttaaactc
ggtttaaatcttacaaatgcgcaaataaccgatcttttgcctactcgtgaagattttgca
atactatatgtattcttaagaaaatcgggaggctatgcctatcctatcgaaacgcttgta
cataaacttgattataaattgtctatcggaaaaatcaggattattcttgacgcaatgagc
gaactgtcgcttattgaggtgattgaaggaataaacagcgcacaaatcagagtttccgaa
gtgtcgcaaaaggttgatcttaattcagccgatacggttataaaattgagggggatgcag
taa
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