Ruminococcus sp. FMB-CY1: LCN94_04135
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Entry
LCN94_04135 CDS
T10118
Name
(GenBank) HU family DNA-binding protein
KO
K03530
DNA-binding protein HU-beta
Organism
ruc Ruminococcus sp. FMB-CY1
Brite
KEGG Orthology (KO) [BR:
ruc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ruc03032
]
LCN94_04135
03036 Chromosome and associated proteins [BR:
ruc03036
]
LCN94_04135
03400 DNA repair and recombination proteins [BR:
ruc03400
]
LCN94_04135
DNA replication proteins [BR:
ruc03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
LCN94_04135
Chromosome and associated proteins [BR:
ruc03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
LCN94_04135
DNA repair and recombination proteins [BR:
ruc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
LCN94_04135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
HU-HIG
HU-CCDC81_bac_2
HU-CCDC81_euk_2
DUF2267
Motif
Other DBs
NCBI-ProteinID:
WBX58303
LinkDB
All DBs
Position
825097..825372
Genome browser
AA seq
91 aa
AA seq
DB search
MNKTELISAVAEQSGLTKKDAEKAVTAVIDTIIDSVAKDEKVQIAGFGTFEQRQRKARTG
SDPRTGNPIEIAASKVPAFKAGKVFKDTVNQ
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgaacaaaacagaacttatttcagctgttgctgagcagagcggtcttactaagaaagat
gcggaaaaggcagttacagcagttattgatacaattatcgactctgttgccaaagacgag
aaggtacagattgcaggcttcggtacatttgagcagcgccagagaaaggcaagaacaggc
agcgacccaagaacaggtaatccaattgaaatcgcagcatctaaggttccggctttcaag
gcaggcaaggtatttaaggatactgtaaatcagtaa
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