Ruminococcus sp. FMB-CY1: LCN94_04870
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Entry
LCN94_04870 CDS
T10118
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ruc Ruminococcus sp. FMB-CY1
Pathway
ruc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ruc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCN94_04870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ruc03019
]
LCN94_04870
03016 Transfer RNA biogenesis [BR:
ruc03016
]
LCN94_04870
Enzymes [BR:
ruc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
LCN94_04870
Messenger RNA biogenesis [BR:
ruc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
LCN94_04870
Transfer RNA biogenesis [BR:
ruc03016
]
Prokaryotic type
tRNA degradation factors
LCN94_04870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
Ribosomal_L6
PCB_OB
SPATA25
KH-I_KHDC4-BBP
ChrB_N
DUF2790
Motif
Other DBs
NCBI-ProteinID:
WBX58444
LinkDB
All DBs
Position
956152..958359
Genome browser
AA seq
735 aa
AA seq
DB search
MNRLMTFDKYRVFETEFAGRPLKVETGKMTQLANGACLVHYGDTTVHVAVTASPKPREGV
DFFPLSVDYEEKMYAVGKIPGAYLKREGRPSEKAILTSRVIDRPIRPLFDKSMRNDVSIV
CTVMSVDLDCSPEITAMIGASIAISISDVPWNGPISGCSVGMIDGEYIINPTEAQRAVSK
MATTVASTSTRIAMIEAGADCVTDDEMYNAIMAGHEANQKIIKFIEDIKAEIGKPKFEFA
SLEPDHDMFEAIKAFAEEDVKVALDTDDKTVRDERLKPIYEAVHAKFDEIYPDSEALIDE
CLYKTQKFIVRRWLLDEQKRVDGRGMDDIRPLAAEVSVLPRVHGSGLFTRGQTQVLTIAT
LGPVSDKQLLDGIDGETEKRYIHHYNFPSYSVGETKPSRGPGRREIGHGALAERALVPVI
PPVEEFPYALRLVSEVLSSNGSTSQGSICGSTLALMDAGVPIKAPVAGISCGLITEGERW
MTMVDIQGLEDFFGDMDFKVAGTKDGITAIQMDLKISGLTPEMIKEALAKTHKARNYILD
EVMLKAIPEPRKELSPYAPKMYTTTIPAEKISEVIGKSGKVIKEIQAECEVKVDIEEDGD
YGKVFVSGIDADKCNRAIEIIKTIAIDPEPGAMYLGKVTRLMDFGAFVEIAPGKEGLVHI
SQLDVKRVDKVTDVVNVGDVIRVKVMEIDDKGRLNLSRRQVLIDVDGLTPENDVDTERKP
RPRRPFNERRNNNRR
NT seq
2208 nt
NT seq
+upstream
nt +downstream
nt
atgaacagattaatgacattcgacaaatacagagtgtttgaaacagaatttgccggcaga
cctttaaaggttgaaacaggtaaaatgacacagcttgccaacggtgcttgtcttgtacat
tacggtgatacaacagttcatgttgctgttaccgcatctccaaagccgagagagggcgtt
gacttcttcccactttcagttgactatgaagaaaagatgtatgccgtaggtaagattccg
ggtgcctatctcaagagggagggcagaccgtcagaaaaggctatccttacaagccgtgta
attgaccgtccgatccgtccgctttttgacaagagcatgagaaacgacgtttctatcgtt
tgtaccgtaatgagcgttgacttggactgctcacctgaaattacagctatgataggtgcg
tcaatcgctatttcaatttctgatgttccgtggaacggccctatttcaggctgttctgta
ggtatgattgacggcgagtacatcatcaacccgacagaggcacagagagctgtttctaag
atggctactactgttgcgtcaacaagcacaagaattgctatgattgaggcaggcgctgac
tgcgttacagatgatgagatgtacaatgccattatggcaggtcacgaggctaaccagaag
attattaagtttatcgaggacatcaaggccgaaatcggcaagcctaagtttgagtttgca
agtcttgagcctgaccacgatatgtttgaggctatcaaggcatttgcagaggaagatgta
aaggttgctcttgataccgatgacaagacagttcgtgacgagagattaaagcctatttac
gaggctgttcacgcaaaatttgatgagatttatcctgacagtgaagcgcttattgacgag
tgcctttacaagacacagaagttcatcgttcgtcgttggttgcttgacgagcagaagcgt
gttgacggcagaggtatggatgatattcgtccgctcgcagcagaagtttctgtacttccg
agagttcacggttcgggtttgtttacaagaggacagacacaagttcttacaatcgctact
ctcggccctgtatctgacaagcagttgcttgacggtattgacggagaaacagagaagcgt
tacattcaccactataacttcccgagctattcagtaggcgaaacaaagccaagcagaggt
ccgggcagaagagaaatcggtcacggcgcacttgcagagcgtgctctcgttcctgtaatt
ccgcctgttgaggagttcccatatgcattaagacttgtatcagaggttctttcttcaaat
ggctcaacctcacagggttcaatctgcggttctacacttgcacttatggacgccggtgtt
ccgattaaagcccctgttgcaggtatttcttgcggtcttattacagagggcgagcgttgg
atgacaatggttgacattcagggtcttgaggacttctttggcgatatggactttaaggta
gcaggtacaaaagacggcattacagctattcagatggaccttaaaatcagcggtcttaca
cctgaaatgattaaagaggctcttgcaaaaacacacaaggctcgtaactacattcttgac
gaggttatgctcaaggctatcccagagccaagaaaagagctttcaccatatgctcctaag
atgtacacaactacaattcctgccgagaaaatcagcgaggttatcggtaagagcggtaag
gttatcaaagaaattcaggctgagtgcgaagttaaggttgacattgaggaagacggcgat
tacggcaaggtgttcgtatcgggcattgacgctgacaagtgcaacagagctattgagatt
atcaagactattgctattgatccggagccgggcgcaatgtacctcggcaaggtaacaaga
cttatggactttggcgcattcgttgagattgcacctggcaaagagggacttgttcacatt
tcacagcttgatgtaaagcgtgtagacaaggtaactgatgtagtaaatgtaggcgatgtg
attcgtgtaaaagtaatggaaatcgacgataagggcagacttaacctttcccgtcgtcag
gttctcatagatgttgacggtcttactcctgaaaacgatgtagatacagagagaaagcca
cgcccacgcagaccttttaacgagagaagaaacaacaacagaagataa
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