Ruminococcus sp. FMB-CY1: LCN94_05380
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Entry
LCN94_05380 CDS
T10118
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ruc Ruminococcus sp. FMB-CY1
Pathway
ruc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ruc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LCN94_05380 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ruc03019
]
LCN94_05380 (recQ)
03400 DNA repair and recombination proteins [BR:
ruc03400
]
LCN94_05380 (recQ)
Enzymes [BR:
ruc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCN94_05380 (recQ)
Messenger RNA biogenesis [BR:
ruc03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LCN94_05380 (recQ)
DNA repair and recombination proteins [BR:
ruc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
LCN94_05380 (recQ)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RQC
Helicase_C
DEAD
HRDC
RecQ_Zn_bind
ResIII
Helicase_Sgs1
MNE1
Motif
Other DBs
NCBI-ProteinID:
WBX58539
LinkDB
All DBs
Position
1057920..1059731
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AA seq
603 aa
AA seq
DB search
MDKFELLKQYFGHDSFRDGQENIIDNISSGRDALCIMPTGGGKSICYQIPALMSDGIAIV
ISPLISLMKDQVTSLNQNGIRAAYINSTLTPAQQSKAIYNAMRGEYKLIYVAPERLEAPA
FLNLCNSIKISLIAVDEAHCVSQWGHDFRTSYLKISDFISKLDDRPVVSAFTATATDAVK
RDILNLLGLKNPFEITTGFDRKNLFFAVKRPQNKQKELLAIVSEHKNQSGIIYCATRKNV
EKVSDFLNENGYDSLIYHAGLSNEIRSKNQDDFINDRCNLIVATNAFGMGIDKPDVRFVV
HYNMPKNLENYYQEAGRAGRDGENSDCVLLYSPGDVHTQKFFIENNDENTELTEEQREKI
KKNDYYKLNKMVGYCTSTTCLRNYILNYFGEYHTNECKNCSACLKEYKLTDVTVDSQKII
SCIIRTGQRFGTSTISAVLAGSKSENIYKYRLNNQSTYGIMSDKRRTVINELITRLIDEE
YITQTEDKYPVLKVTQKSYPLLKGQKSLTMRLAVKDELHREIQHTEVDKVLFDKLKERRK
YLADKASVPPYVIFSDASLRDMCAKLPTNENDFLRISGVGIKKQEKYAKEFIPIIKEYKN
SKS
NT seq
1812 nt
NT seq
+upstream
nt +downstream
nt
atggataagtttgaacttctaaaacaatacttcggccacgattcgtttcgtgacggtcag
gaaaatataatagataatatttcgagcggcagagatgcgctttgtattatgcctacgggc
ggcggaaagtcgatttgctatcagattccggcacttatgtcggacggaattgcaattgtg
atttctccgcttatttcgctgatgaaagaccaggttacttcgcttaatcaaaacggaatc
agagcggcatacatcaacagcacgcttactcccgcccaacagtcgaaagcaatttataac
gctatgcgaggcgaatacaaactgatttatgttgcgcccgaaaggcttgaagcgcccgct
tttcttaatctttgcaacagtataaaaatttctctgattgcggttgatgaggcacactgt
gtgtcgcaatggggtcacgactttcgcacaagctatttgaaaatatccgattttatttct
aaacttgatgacagaccggtcgtttccgcatttacggctacggctaccgacgctgtaaaa
agggatattctaaatctgctcggtcttaaaaatccttttgaaataacaacgggttttgac
agaaaaaatttgttcttcgccgtaaagcgtccgcaaaacaagcaaaaagaattactcgcc
attgtgagtgaacacaaaaatcagagcggaataatttattgtgctacccgtaaaaatgta
gaaaaagtcagcgattttctcaatgaaaacggctatgattctctgatttatcacgcagga
ttgagcaatgaaatacgaagcaaaaatcaggacgatttcattaatgacagatgcaatctg
attgttgcaaccaatgctttcggaatgggaattgataagcccgatgtgcgctttgtggtg
cattataatatgccgaaaaatcttgaaaactactatcaggaggcaggcagagcaggtcgt
gacggcgaaaactccgattgcgttttgctgtacagccccggtgatgttcatacgcaaaaa
ttttttattgaaaataatgacgaaaataccgaacttaccgaagaacagcgtgaaaaaatc
aagaaaaatgattactataaacttaataaaatggtaggttactgtacatctaccacctgc
cttagaaattatattctaaactacttcggtgagtatcacacaaacgagtgcaaaaactgc
tcggcttgccttaaagaatacaagcttactgatgtaacggtagattcgcagaagattatt
tcttgcattatacgaacagggcagcggttcggcacttctacaatatccgccgtgcttgca
ggctcaaaaagcgagaatatttacaaatacaggttaaataatcagtctacatatggcata
atgagtgacaagcgcagaacggttataaacgagcttataacaaggcttattgacgaagag
tatataactcaaaccgaggacaaataccctgttttaaaggtaacgcaaaaatcatatccg
cttttgaaagggcaaaaaagccttacaatgcgcctcgccgttaaagatgagctgcacaga
gaaattcagcatacagaggtcgataaggtgttgtttgacaaacttaaggagcgcagaaaa
tatcttgcggataaagccagcgttcctccgtatgttatattcagcgacgcatctttgcgt
gatatgtgcgcaaaacttccgacaaacgaaaatgatttcttaagaatatccggtgtcggt
attaaaaagcaggaaaaatacgcaaaagaatttatcccgattattaaggaatataagaac
tcaaaatcataa
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