Ruminococcus sp. FMB-CY1: LCN94_06515
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Entry
LCN94_06515 CDS
T10118
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ruc Ruminococcus sp. FMB-CY1
Pathway
ruc03420
Nucleotide excision repair
ruc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ruc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
LCN94_06515
03430 Mismatch repair
LCN94_06515
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ruc03400
]
LCN94_06515
Enzymes [BR:
ruc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCN94_06515
DNA repair and recombination proteins [BR:
ruc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LCN94_06515
MMR (mismatch excision repair)
Other MMR factors
LCN94_06515
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
PcrA_UvrD_tudor
Viral_helicase1
AAA_30
AAA_11
Motif
Other DBs
NCBI-ProteinID:
WBX56594
LinkDB
All DBs
Position
complement(1296086..1298320)
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AA seq
744 aa
AA seq
DB search
MVQSELKKQFSHMNNMQQQAVFCTEGPLLILAGAGSGKTTVLVNRIAYILQSELCKPWQI
LAITFTNKAAGELKERICNAVPEGGSDIWAATFHSTCARILRRYGDRIGFTSHFTVYGTD
DQKKLVKDILKQLNYDEKMLPVKRVLNEISKAKDEMLTPQEMLKRAGYDNLKQSVAKVYE
IYQSRLKTADAMDFDDMLCKTVELFQKCPDILEFYQNQFKYIMVDEYQDTNKVQYKFVSM
LAAKYGNICVVGDDDQSIYKFRGATIENILSFENTFKGAKMIRLEQNYRSTQNILNAANG
VISNNTMRKGKTLWTENAVGDKIEVHTSDSERDEAQFIAKTILDGVADGRKFSDFAILYR
MNAQSNAIEQALSRSGIPHRVIGGRRFYDREEIRDMVAYLQVINNPHDDVRLGRIINVPK
RGIGATTLEKASEIAAGLGESIYSVIKDADVYPQLSRAATKLKSFVALIDGLMEAEQSGD
YSLAELYNLILEHTDYEKYLKTEKDNPDVRIENIEELSSNIIKFEEDYAEEASLSNFLEE
ISLQTDIDNYDAEADSSVMMTLHSAKGLEFPVVFIAGLEEGVFPSIATMMNPDELNEERR
LAYVGITRAKEKLYITKAKSRMLMGHTSYNKVSRFVNEIPPELLNYTGEKKTFASTNGFS
ASSSHISIGAGSKFTPNKSFNTFTKPAVKSGTVYKKGDCVFHKVFGKGMIMKTEKMGNDT
MLEVAFDKAGTKTLMANFSKMEKI
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atggtacaatcagaattaaaaaaacagttttcacatatgaataatatgcagcagcaggct
gtattttgcacagaaggccctttgcttatacttgcgggtgcaggctcgggcaaaacaacc
gttcttgtaaacagaattgcgtatattttgcagtctgaactttgcaaaccgtggcagata
cttgcaattacctttacaaataaggcggcaggggagcttaaagaaagaatctgcaacgct
gttccggaaggcggttcggatatttgggcggctacatttcactctacctgtgcgagaatt
ttaagaagatacggcgacagaatcggttttacaagtcattttaccgtttacggtactgac
gatcagaaaaaacttgtaaaagatattttaaaacagcttaattatgacgaaaaaatgttg
ccggtaaaaagagtgctcaacgaaatttcaaaagccaaggatgaaatgcttactccgcag
gaaatgctcaaaagagcaggttacgataacctcaagcagtccgtggcaaaagtatatgaa
atttaccagtcaagactaaaaaccgcagatgcaatggactttgacgatatgctctgcaag
actgttgagctttttcaaaaatgtcccgatatacttgaattctatcaaaatcagtttaaa
tacataatggttgatgagtatcaggatacaaacaaggtgcagtataaatttgtgagtatg
ctcgccgcaaaatacggcaacatctgcgttgtaggtgatgacgaccagagtatttacaaa
ttcagaggtgctacaattgaaaatatcctttcttttgaaaacacctttaaaggcgctaag
atgataagacttgagcagaattaccgcagtacacagaatattcttaatgcggcaaacggt
gttatttctaacaacacaatgcgtaagggcaaaactttgtggactgaaaatgccgttggc
gataaaattgaggtgcatacttccgattccgagcgtgacgaagctcaatttattgcaaaa
actatacttgacggtgttgcagacggcagaaaattctctgattttgcaattctttaccga
atgaatgcgcagtcaaatgccattgagcaggctttgtcaagaagtggtattccgcatagg
gtaatcggcggcagacgattctatgacagagaagaaatcagagatatggttgcatatctt
caggttattaataatccgcacgacgatgtcagactgggcagaattattaatgtgccaaag
cgtggtattggcgcaactacacttgaaaaagcctctgaaattgccgcgggactcggcgaa
agcatatattccgtaattaaagatgcagatgtatatccacagctttcaagagccgcaaca
aagttaaagagttttgttgcgctgattgacggtcttatggaggctgaacaaagcggagat
tattctcttgcggaattatacaatcttattctcgaacatacagattacgaaaaatattta
aaaacagagaaagacaaccccgatgtaagaattgagaacatcgaagagctttcttcaaat
attatcaaatttgaagaggattacgcagaagaagcgtcactttcaaacttccttgaggaa
atttcattgcagacagatattgataactatgatgcagaagcggattcatcggtaatgatg
acattgcacagcgcaaaaggacttgaatttcccgtagttttcattgcaggtcttgaagaa
ggtgtgttcccgtcaattgccacaatgatgaatcccgatgaacttaacgaggaacgcaga
cttgcttatgtaggtattacaagagcaaaagaaaagctatacattaccaaggcaaagtca
agaatgttgatgggtcatacaagctataacaaagtatcacgctttgtaaatgaaatcccg
cccgaattacttaattatacaggcgagaaaaagacttttgcgtcaacaaacggtttttcc
gcatcctcaagtcatatcagtatcggtgccggttcaaaattcacacctaacaaaagtttt
aatacatttactaaacctgccgttaaatcgggtactgtttacaaaaaaggagattgcgta
ttccataaggtatttggcaaaggtatgattatgaaaaccgaaaaaatgggcaacgacaca
atgcttgaagttgcttttgataaggcaggcacaaaaactcttatggctaatttcagtaaa
atggaaaaaatctga
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