Ruminococcus sp. FMB-CY1: LCN94_08020
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Entry
LCN94_08020 CDS
T10118
Name
(GenBank) PD-(D/E)XK nuclease family protein
KO
K16899
ATP-dependent helicase/nuclease subunit B [EC:
5.6.2.4
3.1.-.-]
Organism
ruc Ruminococcus sp. FMB-CY1
Brite
KEGG Orthology (KO) [BR:
ruc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ruc03400
]
LCN94_08020
Enzymes [BR:
ruc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
LCN94_08020
DNA repair and recombination proteins [BR:
ruc03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
LCN94_08020
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ADDB_N
PDDEXK_1
AAA_7
Motif
Other DBs
NCBI-ProteinID:
WBX56865
LinkDB
All DBs
Position
complement(1633082..1636414)
Genome browser
AA seq
1110 aa
AA seq
DB search
MLRFVLGKSGTGKTEYLYNTLTKLAESGENRIIMLIPDQSSFETEKVFLDRLGAKKCQNV
KVFGFSRFCRYVFDTINFEQKNVIDDSTRAVIMSLALEQLDTSLEMFANSSGKKSVIEAM
LSALKECKKAKISTEMLRNVSALVDDKTLKTKLRETALIIDTFDAIVEQSYIDPLDNLTR
AVEILKEKNIFDGFTLAVDSFSGFSKQQLEVLRLLFMQCESAFVALTLNPFEDEQQSLFS
TTNDTYKSLKAIAKAENIDIKSPIKLEENFRNESEELKILEKNFYQNKNKKYELKTNAIT
AFSADTVYGECEFVAKQIKKLIIEQGYLYSDIAVICRDIAPYVGVLNTVFDKYEIPYFMD
MSYDIYIKPVIRYVCSIFNAVLNGWQKDDLLAILKTGLSNNSDEEISAFENYVYVWNING
SAFLRPFENNPNGYSDKFTQSDFEQLGMAEKVRKSIAHPLQDFKENIKDKTGKEITELLY
NLLCELKVTDAISNMYDKLKANGEIAQAKEQIRLWNLLMGTLDQTVAVAGDLKISLKRYF
ELLSLRLSALQIADIPRTVDSVSVGTATRVRLNNEKAVFLIGCIDGVFPAVPSASGLFSA
YELKTLIANNLPFGDEPAELADFENYMAYKSATAPSQKLFVSFYKTDLTGGTYMQSSIIN
EIIAVFPNILLHREEEYCSVADSTWAILPAFEECARNFNSDSNEERALKKYFSENEIFKD
KYSAVANASKAKPFVFDDKSNVGLLFGNDLNISASQVEKFSLCRFSYFCNYGLNVRERRK
AEINPLEYGTFIHYIMEVFFSKYSKNEFSNMSEDEINKECDSILDDYVNKHFGGSQKNTP
RFMYRFNKIRENVHFLVLHIIEELKNSGFEPVDCELKIDGDIPGYEVVLPTGQKILLRGS
VDRVDILKKGEENYIRIIDYKTGSKEFKLSDILYGLNLQMLIYLYAITLGGEERYGKVTP
AGILYMPATVKPISADNTISDEQINEQVSKGLKMNGMLLNSLDVIDNSDAAYISFNTKNG
TLTAGGSLASLEELGMIFKKLDMTVAKMGTTLYSGNVEASPLKGGKDSCEYCPYDSICAY
HMSDCRNSFSLKNDEVCRILEEEQENGGEE
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
ttgcttagatttgtactcggaaaaagcggtacaggcaaaacggaatacctgtataatacg
cttacaaaacttgcggaatcgggagaaaatcgcataattatgcttattcccgatcaaagt
tcttttgaaacagaaaaagtgtttctcgacaggctcggcgcaaaaaagtgccagaatgta
aaagtattcggtttttcacgcttttgcagatatgtttttgatacgattaattttgaacag
aaaaatgttatcgatgacagcacaagagcggtaattatgagccttgcactcgaacagctt
gacacaagccttgaaatgtttgcaaacagcagcggcaaaaagagtgtgattgaggcaatg
ctttctgcacttaaggaatgtaaaaaggcgaagatttctaccgagatgttaagaaatgta
tcggctttggttgatgataaaacattgaaaaccaaactaagggaaactgcgttaataata
gacacttttgacgctattgttgaacaaagttatatagacccacttgataatcttacaaga
gcagtggaaattttaaaagagaaaaatatttttgacggttttacacttgctgtagattct
ttcagcggattttcaaaacaacagcttgaggtgttaagactgttatttatgcagtgtgaa
agcgcttttgttgcacttacattaaatccttttgaagatgaacaacaaagccttttcagc
accacaaatgatacatataaaagtctgaaagctattgcaaaggcagaaaatattgatata
aaatcgccgataaaacttgaagaaaatttcagaaatgagagtgaagaactaaaaattctt
gaaaagaatttttatcaaaacaaaaataaaaaatatgagttaaaaacaaatgcaataact
gctttttctgccgataccgtgtacggagaatgtgagtttgttgcaaaacagattaaaaaa
ctcattatcgagcaagggtatttgtattccgacattgccgtaatttgcagagatattgca
ccgtatgtgggtgttttgaatactgtgtttgacaaatacgaaattccgtattttatggat
atgagctacgatatttatattaagcccgttattcgatatgtatgctcgattttcaatgct
gttttgaatggttggcaaaaagatgatttactcgcaattttaaaaacaggactcagcaat
aattccgatgaagaaatatcagcctttgaaaactatgtttatgtgtggaatattaacggt
tctgccttcttaagaccattcgagaacaatcctaacggttattcagacaaatttacacag
tctgattttgaacaactgggaatggctgaaaaagtcagaaaaagtattgcacatcctttg
caggattttaaagaaaatattaaggacaagacaggaaaagaaataactgaattactctat
aaccttttatgcgaattaaaagttacagatgctatttctaatatgtatgacaaacttaag
gcaaacggtgaaattgcacaggcaaaagagcaaatcagactgtggaatttgcttatgggc
actcttgaccaaaccgttgcggttgcaggtgatttaaaaatatctttgaaaaggtatttt
gagttgttgtcgctaagattgtcggcactgcaaatcgcagatattccccgtacggttgac
agtgtatcggtgggtacggcaacccgtgtaagacttaataatgaaaaagccgttttcctt
ataggttgtattgacggagtatttccggcagtaccttccgcatcgggacttttttctgca
tacgaattaaaaacgcttattgccaataatcttcctttcggagatgaacctgccgaactt
gcggattttgaaaattatatggcttacaaatccgcaacagcgccgtcgcaaaaacttttt
gtttcattctataaaaccgaccttacgggcggcacatatatgcaatcttcaattataaat
gaaataatcgctgtttttccgaatattttattgcacagagaagaagagtattgctcggtt
gcggacagcacatgggctatattgcctgcgtttgaggagtgtgcaagaaattttaacagt
gacagcaatgaagaaagagcgttaaaaaaatatttttccgaaaacgaaatatttaaagat
aagtacagtgccgttgcaaacgcaagtaaagcaaagccttttgtatttgatgataaaagc
aatgtaggtcttttgtttggcaatgatttaaacatatccgcctcgcaggttgaaaaattc
agtttatgcagattttcatatttttgcaattacggtctgaatgttcgtgaacgcagaaaa
gcggagataaatccccttgaatacggtacttttattcattatattatggaagtatttttc
agcaaatactctaaaaacgaattttcaaatatgagtgaagatgagataaacaaggaatgt
gacagtattcttgatgattatgtcaataaacatttcggcggttcacaaaaaaatactccc
cgctttatgtacaggttcaataagataagagaaaatgtacattttcttgttttgcatatc
atagaagaacttaagaacagcgggtttgaacccgtggattgtgaacttaaaatagacgga
gatattccggggtacgaagtcgttttgcctacggggcagaaaatattgttaaggggcagt
gttgacagggtagatattctgaaaaaaggcgaggaaaattatatcagaattattgactat
aaaacaggttcaaaggaatttaaactgtctgatattttgtacggacttaatttgcaaatg
cttatctatctttacgccattacgcttggcggtgaagagcgttacggtaaggttactcct
gcaggaatactctatatgcctgccaccgtaaagccgatttctgccgataataccataagt
gacgagcagataaacgagcaggtttccaagggacttaaaatgaacggtatgctgttaaat
tctcttgatgttattgataattcggatgccgcttatatttcattcaatacaaaaaatgga
acgcttacagcgggcggaagtcttgcgagccttgaagaattgggtatgattttcaaaaaa
cttgatatgacggttgcaaaaatgggtacaacgctttattcgggcaatgtagaggcttct
ccgcttaaaggcggtaaagattcctgcgaatattgtccgtatgacagtatttgtgcatat
catatgagtgactgcagaaacagtttttcacttaaaaacgacgaggtatgcagaatactt
gaagaagaacaggaaaacgggggtgaggagtaa
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