KEGG   Rufibacter sp. DG15C: TH61_05855
Entry
TH61_05855        CDS       T04326                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
rud  Rufibacter sp. DG15C
Pathway
rud03030  DNA replication
rud03410  Base excision repair
rud03420  Nucleotide excision repair
rud03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rud00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TH61_05855
   03410 Base excision repair
    TH61_05855
   03420 Nucleotide excision repair
    TH61_05855
   03440 Homologous recombination
    TH61_05855
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rud03032]
    TH61_05855
   03400 DNA repair and recombination proteins [BR:rud03400]
    TH61_05855
Enzymes [BR:rud01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     TH61_05855
DNA replication proteins [BR:rud03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     TH61_05855
DNA repair and recombination proteins [BR:rud03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     TH61_05855
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TH61_05855
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 HHH_2 HHH_5 DNA_pol_lambd_f
Other DBs
NCBI-ProteinID: AMM50798
UniProt: A0A127B0Q7
LinkDB
Position
complement(1393251..1396115)
AA seq 954 aa
MSTPDKRLFLLDAMALIYRAHFAFSKNPRINSKGMNTGAALGFTNTLVDLLNREKPTHIG
VCYDAPSKTFRHDSFVEYKANRQAMPEDISIAIPYVKKIVEAFGIPGMMLDGFEADDIIG
TLSCKAEKAGYDVFMMTPDKDYYQLVTDHVFVYKPAFLGNAIEVIDKPKVLERWEISDVK
QVIDILGLQGDAVDNIPGIPGIGEKTAKTLIQKYGSVENLIAHSHELKGKQKENVEKFAE
QGLMSKELATIHLDVPIDFDEQGLFYEGPDVEKLAALFDELEFRQLATRVLGTASPAVPK
PISNKPTVGKGFKSDKPMGQTSLFDMPANETVVQEEGEETTAGTYITGVRKTIDTTLHEY
HLLTTPEQRAQLLKYLKLQKEVSFDTETTSIDAITARLVGISFCYIPGEAYYIPVPADDY
EATLEIVQEFKEILESPSITKIGQNIKYDLVVLQRYGIDVQGPLYDTMLAHYLLEPDMRH
NMDLLAETYLHYTPIAIETLLGKGKNQLTMDKLPPLQIYEYACEDADVTLQLKNYFDPLL
EKQGLKKLFNEVENPLLRVLGHMEREGVSIDAEALGESSQVLQTSIQEIEQKIFNLAGME
FNIGSPKQLGEVLFDRLQLGGNKIKKTKTGQYATGEEILSKLAFEHEIVALILDHRQLTK
LKSTYVDALPQLICREDNRLHTSYNQAVAATGRLSSTNPNLQNIPIRTEKGREIRKAFVP
RDENHVLLSADYSQIELRIMAHFSNDATMKEAFQKGLDIHSSTAAKVFHVPVDQVDSDMR
RKAKTINFGIIYGISAFGLAERLAIPRREAAEIIEAYFQEFPAVKQYMDSAINEAREQEF
VETLLGRRRYLRDINSRNQNVRGYAERNAINAPIQGTAADIIKIAMINIDQWLRDEKLAS
RMILQVHDELVFDVLKEELPIVQAKVEELMKNAFPLSVPMEVGMGTGENWLQAH
NT seq 2865 nt   +upstreamnt  +downstreamnt
atgagtacaccagacaaacgccttttccttttagacgccatggcgctcatttaccgcgcc
cacttcgcgttcagtaagaatcctagaatcaactccaagggcatgaacaccggcgccgcg
ctgggcttcaccaacaccttagtagacctgctcaaccgcgaaaagcccacgcacattggg
gtctgctatgatgcgccgtccaagacgtttaggcatgacagcttcgtggaatataaggcc
aaccgccaggctatgcccgaagatatttccatcgccatcccctatgtgaagaagattgtg
gaggcctttggcataccaggcatgatgctggacggttttgaggccgatgacatcataggc
acgctttcctgcaaagccgagaaggccgggtacgacgtcttcatgatgacgccagacaag
gactactaccaattggtaacagaccatgtgtttgtctacaagcccgcgttcttgggcaat
gccatagaagtgattgacaagcccaaagtgctggagcgctgggaaataagcgatgtaaaa
caagtcattgacattctaggtttgcaaggggatgccgtggacaacatcccgggcatcccg
ggcattggcgagaaaaccgcgaagacgctcattcagaaatacggttcggtagagaacctt
attgcccactcgcatgagttgaaaggcaagcaaaaggagaacgtggagaagttcgcggag
cagggcctcatgtccaaagaactggccaccatccatctggacgtgcccattgactttgac
gagcaaggcctgttttatgaagggccagatgtggagaaactggcggcactctttgacgaa
ctggagttcaggcaactggctacccgcgtgctgggtaccgcctcgcccgccgtccccaaa
cccatttccaacaagcccacggtgggcaaaggcttcaaatcagacaagcccatgggccag
acgtctctgtttgacatgcccgccaatgagaccgttgtccaggaagaaggcgaggaaacc
accgcaggtacctatatcacaggcgtcagaaaaactattgacactaccctgcatgagtac
cacctgcttaccaccccagagcagcgagcgcaacttttaaaatacctgaaactccagaag
gaagtctcttttgacaccgagaccaccagcatagacgccatcaccgcacgcttggtgggc
atctcgttctgttacatccccggcgaggcctattacattccggtgccggcagatgactat
gaggctaccctagagattgtgcaggagttcaaggaaatactggaaagccctagcatcacc
aagattggccagaacatcaagtatgacctagtggtgctacaacgctacggcattgacgta
cagggaccgctctatgacaccatgctggcccactacctcctggagcccgacatgcgccac
aacatggacctgctcgctgagacgtacttgcattacacgcctattgccattgagacgctg
ttaggcaaaggcaagaaccagctcaccatggataagctgccaccgctccaaatctatgaa
tacgcttgcgaggacgcggacgtcacgcttcaacttaagaactactttgacccgctgttg
gagaaacaaggccttaagaagctcttcaatgaggtggagaacccattgttgcgcgtgctg
ggtcacatggaacgtgagggcgtgagcattgacgccgaagccttgggagaatcctctcaa
gtgctgcaaaccagcatccaggagattgagcagaaaatcttcaacctggccggcatggag
ttcaacatcgggtcacctaaacagctgggcgaggtgttatttgaccgcctgcagttggga
gggaacaagattaagaaaaccaagacgggccagtatgctaccggcgaggagattctatct
aagctggcctttgagcatgagattgtcgcgttgattctggatcaccggcagcttactaaa
ttgaagagcacgtacgtagacgcattgccgcaattgatttgccgtgaggataaccgtttg
cacacgtcctacaaccaagccgtggccgcgacgggccgtttgagctccaccaatcccaac
ctgcagaatatccccattcgcacagagaaagggcgggagatacgcaaagcctttgtgccg
agggatgaaaaccacgtcctgctgtccgcggattactcgcagattgagctacgcatcatg
gcgcatttcagtaatgacgccaccatgaaagaagcgttccagaagggcctggatattcac
tcgtctaccgcggccaaggtgttccacgtgcccgtggaccaagtagacagtgacatgcgc
cggaaggccaaaaccattaacttcgggattatctacggtatttcggcgtttgggctggca
gagcgtctggctattccaagaagagaggccgccgagattattgaggcgtacttccaggag
tttccggcggtgaagcagtacatggacagtgccatcaacgaagcccgtgagcaggagttt
gtggagaccttgctgggccgtagacgctacttaagggacatcaatagccgtaaccagaac
gtacgtggctacgccgaacgaaatgccatcaacgccccaatccagggcacggcggccgac
atcatcaagattgctatgatcaacattgaccagtggctacgcgatgagaaactggccagc
cgcatgatcttgcaggtgcatgatgaattagtgtttgacgtgctcaaagaagaactacca
atagtacaagccaaagtggaggagcttatgaagaatgccttcccgctgagcgtgcctatg
gaagttggcatgggcaccggcgagaattggctacaggcccattaa

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