Rufibacter sp. DG15C: TH61_12740
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Entry
TH61_12740 CDS
T04326
Name
(GenBank) DEAD/DEAH box helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
rud
Rufibacter sp. DG15C
Brite
KEGG Orthology (KO) [BR:
rud00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rud03019
]
TH61_12740
Enzymes [BR:
rud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TH61_12740
Messenger RNA biogenesis [BR:
rud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
TH61_12740
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
CON_HrpB
ResIII
HA2_C
AAA_30
AAA_19
AAA_22
HA2_N
Flavi_DEAD
AAA_25
NPHP3_N
Helicase_RecD
nSTAND3
UvrD-helicase
Motif
Other DBs
NCBI-ProteinID:
AMM51870
UniProt:
A0A127B3A1
LinkDB
All DBs
Position
complement(2981647..2984085)
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AA seq
812 aa
AA seq
DB search
MPFDPFTIDLPVREIIPSVREHLAAQNTLIVNAPPGAGKSTLLPLALLDEAWLKGQKIIM
LEPRRLAARTIAERLAQLLGQEVGQTVGYRIRFENRTSEKTRLEVVTEGILTRMLHSDNA
LNGVGLVIFDEFHERSIHADVAMALAREAQSTQRPDLRILVMSATLNMPQLTRLLNAPAV
ESQGRQYPINVQYAGETDAQLLHEMTDRAIRKALQEQQGDVLVFLPGEQDIRKVEALLRR
GLREVAIHPLYGMLPPGKQYAAIMPDRNGKRKVVLATSIAETSLTIEGVTVVIDTGFAKT
QRFDPATGLSRLETVRISKDAADQRAGRAGRLGPGTCYRLWTEALHERLAPHRTPEIQEA
DLAPLVLDMAAWGISDIRALTWLTPPPKAALLYAQETLHQLNALENGRITEHGRKMHALP
THPRLAHMLLAAQESDQLALATDIAALLEERDPLPREAGIDLNLRIEALRRTRKEGLHQK
RFSKIDKIAASYRRLFNIEPENSTVDPYETGVLLANCYPERIAYARPGNNAQFQLANGKY
ASAGHRDDLAHDPWLAIAHLHAGGDGPGRIFLASPLNPKDLAPLVKQKDVVSWDPEEGEL
TASRDMRIGSIVLQSKPLPEPDERFLVQAICETIKREGEDWLNFSDAVKQFQNRVLCLRK
WHPTEGFPDISTPTLLMTCNEWLAYHLEDVQIGQDLLDIDLLPLLQNMLNKEQRDRLEEL
APATMTLPDGHAVELYYPDNALAPIMEIRLQDVFAWEHNPTVDGGDVGVALHLLTPDLKP
LKVVNSLHYFWQEEYRLMRGSLKARFPKVDWR
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
ttgcctttcgacccatttaccatagacctgcccgttcgggagattatcccttccgtgcgg
gaacaccttgccgcccagaacacgctgattgtgaacgcgcctccgggggcgggcaagagt
accctgttgccgctggccctcttagacgaggcctggctgaaggggcagaaaatcatcatg
ctggaaccccgtaggctggcggcccgcaccattgccgaacggctggcgcaactgctgggc
caggaggtgggccagaccgtgggctaccgcatccggtttgagaaccgcacctcagagaag
acccgcctggaggtagtcaccgagggcattctcacccgcatgctccactcagacaacgcg
ctcaacggcgtggggctggtcatctttgacgagttccatgagcggagcatccacgcagac
gtggccatggccctggcacgcgaagcccagtctactcagcgcccagacctgcgcattctg
gtcatgagcgccacgctcaacatgccccagctcacccgcctgctcaacgcccccgccgta
gagagccagggccggcaataccccatcaacgtgcagtacgccggcgagaccgatgcccaa
ctgctccatgaaatgacggaccgggctatccggaaagccctgcaagaacagcaaggcgat
gtgctggtgtttctgcccggtgagcaggacattagaaaagtagaagccctgctgaggagg
ggcctgcgcgaggtggccatccacccgctgtacggcatgttgccccccggcaagcagtac
gccgccattatgccagaccgcaacggcaagcgcaaagtggtgctggctacctccattgcc
gagaccagcctcaccattgaaggcgtaaccgtggtcattgacacgggctttgccaaaact
cagcgttttgaccccgccaccggccttagtaggctggagacggtgcgcatctccaaagac
gccgccgaccaacgcgccggtcgggccggacggttaggtccgggcacctgttaccgcctc
tggaccgaggccctgcacgaacgcctggccccgcaccgcacccctgagattcaggaagcc
gacctggccccgctggtgctggacatggccgcctggggcatctcagacatcagggcgctc
acctggctcacaccgccgcccaaagccgccctgctctacgcccaggaaaccctgcaccag
ctcaacgccctggagaacggccgcatcaccgagcacggccgcaagatgcacgccctgccc
acccatccgcgcctggcgcacatgctgctggccgcccaggaaagcgaccaactggcgttg
gccaccgacattgccgccctgctggaagaacgtgaccccttgccccgcgaagccggcatt
gacctgaacctgcgcattgaggccctgcgccgcacccgcaaagaaggactgcaccaaaag
cgcttctccaagattgacaagattgccgccagttaccgccgcctgtttaacattgagccc
gagaacagcacggtagacccgtatgagaccggtgtgctgctggccaactgctatccagag
cgcatcgcctacgccaggcccggcaacaacgcccagttccagctggccaacggcaagtac
gcctctgccggccaccgcgatgacctggcccatgacccctggctggccattgcccacctg
cacgccggtggtgacggtccgggccgcattttcctggcctcgccactcaaccccaaagac
ctggccccactggtgaagcagaaagacgtggtctcctgggaccccgaggaaggtgaactt
accgcttcccgtgacatgcgcattggctccatcgtgctccaaagcaaacctctccccgag
cccgacgagcgtttcctggtgcaagccatctgcgaaaccatcaaacgcgaaggcgaggat
tggctcaacttctctgacgccgtgaagcagttccagaaccgtgtgctgtgtctgcgcaaa
tggcaccccaccgaaggcttcccagacatcagcacccctacccttctcatgacttgtaat
gagtggctggcctaccacctggaggacgtccaaattggccaggacctcctggacattgac
ctcttgccccttttacagaacatgttgaataaggaacaacgcgaccgcctggaagaactg
gctccggctaccatgactttgccagacggacacgccgtggaactgtactacccagacaac
gccctagcgcccatcatggaaatcaggctgcaagacgtgtttgcctgggagcataaccct
accgtagacggcggcgacgtaggtgtggccctgcacctgctcactccggacctaaagccc
ctgaaagtggtgaacagcctgcattacttctggcaggaagaatatagattgatgcgtggt
tctttgaaggcaaggtttccgaaggtggattggaggtaa
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