KEGG   Rufibacter sp. DG15C: TH61_13645
Entry
TH61_13645        CDS       T04326                                 
Name
(GenBank) signal recognition particle
  KO
K03106  signal recognition particle subunit SRP54 [EC:3.6.5.4]
Organism
rud  Rufibacter sp. DG15C
Pathway
rud02024  Quorum sensing
rud03060  Protein export
rud03070  Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:rud00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03060 Protein export
    TH61_13645
 09130 Environmental Information Processing
  09131 Membrane transport
   03070 Bacterial secretion system
    TH61_13645
 09140 Cellular Processes
  09145 Cellular community - prokaryotes
   02024 Quorum sensing
    TH61_13645
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   02044 Secretion system [BR:rud02044]
    TH61_13645
Enzymes [BR:rud01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.5  Acting on GTP to facilitate cellular and subcellular movement
    3.6.5.4  signal-recognition-particle GTPase
     TH61_13645
Secretion system [BR:rud02044]
 Sec (secretion) system
  Prokaryotic Sec-SRP core components
   TH61_13645
  Eukaryotic Sec-SRP protein
   TH61_13645
SSDB
Motif
Pfam: SRP54 SRP_SPB SRP54_N AAA_22 Zeta_toxin AAA_16 SRPRB AAA_30 CbiA CLP1_P ATP_bind_1 cobW nSTAND3 AAA_14 APS_kinase AAA_18 KTI12 ATPase_2 AAA_31 MeaB DO-GTPase1 AAA_24 YqeC GTP_EFTU NPHP3_N MMR_HSR1 Radical_SAM MobB NTPase_1 Thymidylate_kin AAA_19
Other DBs
NCBI-ProteinID: AMM52017
UniProt: A0A127B4F5
LinkDB
Position
3188410..3189747
AA seq 445 aa
MFENLSTKLDRAFKTLKGQGSITEINVAQTIKEVRRALVDADVNYKVAKTVTDKIKDEAM
GRDVLIAVSPGQLMVKIVHEELTELMGGEKKDINITGSPAIILIAGLQGSGKTTFTGKLS
NFLKKQGKGVLVAACDVYRPAAIDQLSVLAEQVGVEFYAERESKDPVSIARNAVEHAKKT
GKKVVIIDTAGRLAVDEAMMKEIYDIKEAIKPTETLFVVDSMTGQDAVNTAKTFNERINF
DGVVLTKLDGDSRGGAALSIRAVVEKPIKFISTGEKMEALDLFYPDRMAQRILGMGDVIS
LVERAQQTFDEDEAKRINKNIRKNQFNFDDFLSQLEQIKRMGDIKDLVGMIPGVSKMMKD
VEIDESAFKPIEAIIKSMTKEERQNPDMISGSRRNRIAKGSGTNIQQVNNLMKQFNDMRK
MMKSMNKMAGTKGGLAKLGSMMGRR
NT seq 1338 nt   +upstreamnt  +downstreamnt
atgtttgagaatttaagtaccaagctagaccgcgcctttaaaacccttaagggccaaggc
agcatcactgaaatcaacgttgcccagaccatcaaagaagttcgtcgcgccttggtggac
gctgacgtgaactacaaggtggccaagaccgtgaccgacaaaatcaaggacgaggccatg
ggccgcgacgttctcattgctgtgtcaccaggccagttgatggtgaagattgtgcacgaa
gaactcaccgaactaatgggcggcgagaagaaggacatcaacatcactggttcaccagct
atcatattaatcgccggtcttcagggttctggtaagactaccttcacaggtaagctttct
aacttcttgaaaaaacaaggcaaaggcgttctggttgcggcctgtgacgtgtaccgtccg
gcggctattgaccagttgagcgttttggctgagcaggtaggcgtggagttctacgcggag
cgcgagtccaaagacccggtttccattgcccgcaacgccgtggagcatgccaagaaaacc
ggcaaaaaagtagtcatcattgacaccgccgggcgtttggccgtggatgaggccatgatg
aaggaaatctacgacatcaaggaggccatcaagccaaccgagaccttgtttgtggtagac
tccatgaccggtcaggatgcggtgaacaccgccaagacgttcaacgagcgcatcaacttt
gacggtgttgttttgaccaagttggacggtgactcccgcggtggagcggctctttccatt
agagccgtagtagagaagcctattaaattcatctctaccggtgagaagatggaggctctt
gacctgttctaccctgaccgtatggcccagcgtatcttgggcatgggtgacgttatctcc
ttagtagagcgtgcccagcagacctttgacgaggacgaagctaagcgtatcaacaagaac
atccgcaagaaccagttcaattttgatgacttcttgtcgcagttggagcaaatcaagcgg
atgggtgatatcaaagacttggtgggcatgataccgggcgtgagcaagatgatgaaggac
gtggagattgacgaaagcgccttcaaaccgattgaggccatcatcaagtccatgaccaag
gaagagcgtcagaacccagacatgatttcgggtagccgccgtaaccgcatcgcgaaaggt
tctggtaccaacattcagcaggtgaacaacctgatgaagcagttcaacgacatgcgcaaa
atgatgaagtccatgaacaaaatggccggcaccaaaggcggtcttgccaaactgggcagc
atgatggggcgcagataa

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