Rufibacter sp. DG15C: TH61_13920
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Entry
TH61_13920 CDS
T04326
Name
(GenBank) 2-dehydro-3-deoxyphosphogluconate aldolase
KO
K01627
2-dehydro-3-deoxyphosphooctonate aldolase (KDO 8-P synthase) [EC:
2.5.1.55
]
Organism
rud
Rufibacter sp. DG15C
Pathway
rud00541
Biosynthesis of various nucleotide sugars
rud01100
Metabolic pathways
rud01250
Biosynthesis of nucleotide sugars
Module
rud_M00063
CMP-KDO biosynthesis, ribulose-5P => CMP-KDO
Brite
KEGG Orthology (KO) [BR:
rud00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00541 Biosynthesis of various nucleotide sugars
TH61_13920
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
rud01005
]
TH61_13920
Enzymes [BR:
rud01000
]
2. Transferases
2.5 Transferring alkyl or aryl groups, other than methyl groups
2.5.1 Transferring alkyl or aryl groups, other than methyl groups (only sub-subclass identified to date)
2.5.1.55 3-deoxy-8-phosphooctulonate synthase
TH61_13920
Lipopolysaccharide biosynthesis proteins [BR:
rud01005
]
Lipid A
TH61_13920
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Gene cluster
GFIT
Motif
Pfam:
DAHP_synth_1
NeuB
TPP_enzyme_N
Motif
Other DBs
NCBI-ProteinID:
AMM52063
UniProt:
A0A127B3J3
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All DBs
Position
3251221..3252033
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AA seq
270 aa
AA seq
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MTISIPKLQHTDSDNFFLMAGPCAIEGEEMALQIAEELVRITNRLRIPLIFKGSYRKANR
SRLDSFTGIGDEKALKILAKVSATFGIPTVTDIHESHEAAMAAAYVDVLQIPAFLCRQTD
LLVAAAQTGKVVNIKKGQFLSGESMRFAVDKVKESGNPNVILTDRGNTFGYSDMVVDFRN
IPAMQDNQVPVVMDVTHSLQQPNQASGVTGGKPALIETIAKAAIAVGADGLFIETHPTPA
TAKSDGANMLQLSNLEGLLEKLVRIREAVR
NT seq
813 nt
NT seq
+upstream
nt +downstream
nt
atgactatctccattcctaaattacaacatacagactctgacaacttctttttgatggct
ggtccatgcgccattgaaggcgaagaaatggccctgcagattgccgaggagctggtgcgc
atcactaaccgcttacgcattccgcttatcttcaagggctcttaccgcaaagccaaccgc
tctcgtttagactccttcacagggattggtgatgagaaagcgcttaaaatcctggccaag
gtgagcgcgacttttggcatcccaaccgtaacggacattcatgaaagccatgaggctgcc
atggctgctgcttacgtagacgtgttgcagattccggcgttcctttgccgccaaacagat
ttattggtggccgctgcccaaaccgggaaagtggtcaacatcaagaaaggacaattcttg
tctggtgagtccatgcgctttgccgtggacaaggtgaaagaatccggtaacccgaacgtc
atcttgacggaccgtggcaatacattcgggtactcagacatggtagtggacttcagaaac
atacccgccatgcaagacaaccaagtgccagtggtgatggacgtgacgcactcgttgcaa
cagcctaaccaagcctctggcgtaactggcggcaagcctgccttaatagagaccattgcc
aaggcggccattgccgtaggcgcagacggcctcttcattgaaacccacccaacacccgcc
accgcaaagtcagacggcgctaacatgcttcaattgtccaatctagaagggctattagag
aagctggtgagaattagagaagcggtgaggtaa
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