Rufibacter sp. DG15C: TH61_14115
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Entry
TH61_14115 CDS
T04326
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
rud
Rufibacter sp. DG15C
Brite
KEGG Orthology (KO) [BR:
rud00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rud03032
]
TH61_14115
03400 DNA repair and recombination proteins [BR:
rud03400
]
TH61_14115
Enzymes [BR:
rud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
TH61_14115
DNA replication proteins [BR:
rud03032
]
Prokaryotic type
DNA Topoisomerases
TH61_14115
DNA repair and recombination proteins [BR:
rud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TH61_14115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Motif
Other DBs
NCBI-ProteinID:
AMM52097
UniProt:
A0A127B4P3
LinkDB
All DBs
Position
complement(3288149..3290602)
Genome browser
AA seq
817 aa
AA seq
DB search
MIKNLVIVESPAKAKTIEGYLGKDFIVKSSFGHVRDLPKDNNAIDIKNGFKPTYVVSADK
REVIASLKKLAKEAEVVWLASDEDREGEAISWHLSEALNLNEAKTRRIVFREITKNAILN
AIDNPRTIDINLVNAQQARRVLDRLVGFELSPVLWKKIKTGLSAGRVQSVAVRFVVERER
EIERFKSESAFKVVAIFDVSGKRLEAELNTRFKTREQAEDFLKRNIGASYTIDSLEKKPT
KRSPAAPFTTSTLQQEASRKLYFSVAQTMQVAQRLYEAGKISYMRTDSVNLSQDAMAAAA
AEIARSFGDNFVKTRQYKTKSKSAQEAHESIRPTDFAALKASDDRNEQRLYDLIRKRAIA
SQMADAEIEKTTAVISISGQPEKLVATGEVVKFEGFLKVYAESTDDEELSDEETQGMLPP
LKEGQTLNLQRLQATERYSRPAPRYTEASLVKKLEEMGIGRPSTYAPTISTIQKRGYVEK
DNREGKERPYQILSLENGEIQALTKTEMAGAEKAKLFPTDIAMVVTDFLVAHFPSIIDYS
FTAKVEEEFDQIAMGNKEWDKMLDVFYSSFHGTIEASADIERASVSGARELGLDPISGKM
MVAKLGRFGPYVQLGEENEETGEKPVYASLRKGMFLESITVEQAQELFKLPRVVGEYEGK
DMKAAIGRFGPYIQHNSKFYSLPKTIDPLLISEAEAIELIEAKRKADAEKMIKTFPENPE
VTVLNGRFGPYIVVGKKNVKIPKGQEPAELTLEQCLELAANTPDKPARGGFKKKAEPAEK
ADAPKKTAAKKPAAKKASAKKATGTTAKKAAPKKKAS
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgataaagaacttagtaattgtggagtccccagccaaggccaagaccattgaagggtac
ctgggcaaagattttatcgtgaaatctagcttcgggcacgtgcgggacctccccaaggac
aacaatgcaatagacattaagaacggcttcaaacccacctacgtggtgtctgcggacaag
cgtgaggtgattgccagccttaaaaagcttgccaaggaggccgaagtggtgtggttggca
tcagatgaggaccgcgagggagaggccatttcatggcacttatctgaggccctaaacctg
aacgaggccaaaacgcgccgcatcgtcttccgggagattactaagaacgccatcctcaac
gccattgacaacccgcgcaccattgacattaacctggtaaacgcccaacaggcaagacgc
gtgctggaccgtctggtaggctttgagctgtctccggtgctttggaaaaagataaagaca
ggcctatcagcgggacgggtacaatccgtagccgtgcgttttgtagtggagcgcgaacgg
gaaattgagcgcttcaaatctgagtcggcgtttaaagtggtggctatttttgacgtttct
ggcaaacgcctggaggccgaactgaacacacgctttaaaacccgtgagcaagccgaagac
ttcctgaaacgcaacattggcgcgtcttacaccattgatagtctagaaaagaaacccacc
aagcgcagcccagccgcgccgtttactacgtctaccctgcaacaagaggccagccgaaag
ctatatttctccgtggcccagaccatgcaagtggcccaacgcctgtacgaagccggtaag
atctcctacatgcgtaccgactccgtgaacctgtcacaggatgccatggctgccgccgct
gccgagattgcccgcagctttggcgacaacttcgtcaaaaccagacaatacaaaaccaaa
tctaagtcggcgcaagaagcccacgaatccatcaggcctacggacttcgccgcattaaaa
gccagcgatgaccgaaacgagcagcgtctgtatgacttgatcagaaaacgcgccatcgcc
tcacagatggccgatgcagagattgagaaaactactgcggttatttctatctctggtcag
ccagagaaactggtagctacgggtgaggtagtgaagtttgaaggattcctgaaagtgtac
gctgagtctacggatgacgaagaattgagcgacgaggaaacccaaggcatgcttccacca
ttgaaagaaggccaaactttgaacttacaacgccttcaagctactgagcgttatagccgt
cctgcgccgcgctacacagaggccagcttggtaaagaaactagaagaaatgggcattggt
agaccatccacttacgcccctactatctctaccatccagaaacgcggctacgtagaaaaa
gacaacagagaaggcaaggaacggccgtaccaaatcctgtctttggaaaacggcgaaatc
caagccctgaccaaaacagagatggccggcgccgagaaagccaaactcttccccacagac
atcgccatggtggtgactgactttttagtggctcacttccccagcatcattgactattcc
ttcacggctaaagtagaggaagagtttgaccagattgccatgggtaacaaagaatgggac
aagatgttagatgtcttctactccagtttccatggaaccattgaggccagtgcagacatt
gagcgcgccagcgtgagcggtgcccgtgaactaggcttggatccaatctccggcaagatg
atggtggccaagttaggtcgcttcgggccatatgtgcagttgggcgaagagaacgaagag
accggtgagaagcccgtgtacgccagcttaagaaaaggtatgttcctggagtccattact
gtggagcaagcccaggaattgttcaaattgccaagggtggtgggtgagtacgaaggcaag
gatatgaaagctgctattggacgttttgggccttatattcagcacaatagcaagttctat
tcattacctaaaaccattgatccgctactaatttctgaggctgaggccattgaactgatt
gaggccaagcgcaaggcagacgccgagaagatgatcaagaccttcccggaaaacccagaa
gtaaccgtcttgaacggacgctttggtccatacattgtggtgggcaagaagaacgtcaaa
atcccgaaaggacaggaaccagccgagctcaccttagagcaatgcctggaactggcggcc
aacaccccagataaaccagcccgtggcggctttaagaaaaaagctgaacccgctgaaaaa
gccgacgcccctaagaaaactgccgccaaaaaacccgcagctaagaaagcatcagctaaa
aaggccaccggtaccaccgctaaaaaggctgctcccaaaaagaaagccagctag
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