Rufibacter sp. DG15C: TH61_14255
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Entry
TH61_14255 CDS
T04326
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
rud
Rufibacter sp. DG15C
Pathway
rud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TH61_14255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rud03019
]
TH61_14255
03009 Ribosome biogenesis [BR:
rud03009
]
TH61_14255
Enzymes [BR:
rud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TH61_14255
Messenger RNA biogenesis [BR:
rud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TH61_14255
Ribosome biogenesis [BR:
rud03009
]
Prokaryotic type
rRNA helicases
TH61_14255
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AMM52118
LinkDB
All DBs
Position
3327667..3329583
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AA seq
638 aa
AA seq
DB search
MERIKFQELSLSEEMQRAIVDLGYEEASPIQTAAIPVLLEGRDVIGQAQTGTGKTAAFAI
PTIEGIDPNNREVQALILCPTRELAIQVAEEILKLCKYKKGISVVPIYGGQPYDRQLRAL
KQGVQIVIGTPGRVMDHIERGTLRLETTKTIILDEADEMLDMGFREDIEFVLTKMPETRQ
TVFFSATMSKPIMELTRKYQTNPEIVKVVHQQLTVTNIEQIYFEVRSSGKMEVTTRLIDM
YNFKVVIIFCNTKRMVDELVSNLQARGYFADGLHGDLNQNQRTNVMNKFKAGTLEILVAT
DVAARGIDVDNVEAVINYDLPQDEENYVHRIGRTGRAGKSGKAFSFVAGRDLYKLRDIER
FTKAKIVRQPVPTYEDVAEVRTTLVLDQVKDVIEKGGLAKHVVKIERLIDQDFTTLDIAA
ALLKLLMKDTKTKEKGAEANESKGGPKPGFDRLFITLGKKDRLHPKDLVDIMTDNTSIPG
NKVGDIDLYDRFSFVEVPSEYTQEILERLGMTEINGMTVKFQKAEKKTMDPAEGGRELQE
LEDRPRKFYDKPFGGGGGDRGGNRGGFGGDRGGYGGGNRGGGDRGGSRGGFGGGDRDRGG
DRGGSRGGDRGGSRFGGGDRDRGGNSGGGFRERKRRDF
NT seq
1917 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaattaaattccaggagctttcgctatcggaagagatgcaacgtgctatcgtt
gacttaggctatgaagaagcctctcctattcaaactgccgccatccctgtgttgctggaa
ggccgcgacgtgattggccaggcccagactggtaccggcaaaaccgccgctttcgccatc
cctactattgaaggcattgaccctaacaaccgcgaggtacaggcgttgattctttgccca
acccgtgagttggctattcaggtggctgaagagatcttaaaactttgtaaatacaaaaaa
ggcatcagcgtagtgcctatctatggtggtcagccctatgaccgtcagttacgcgcccta
aaacaaggggtacagatcgtgatcgggacgcctggtcgcgtgatggaccacattgaaaga
ggaacccttagactagagaccacaaaaaccatcatcctggatgaggctgatgagatgttg
gacatgggctttagagaagatattgagtttgtcttgaccaagatgccagaaacccgccag
acggtgttcttctcggctaccatgagcaagcccatcatggagttgacgcgcaagtaccaa
accaatcctgagattgtgaaggtagtgcaccagcagttgaccgtgaccaacattgagcag
atctattttgaagtgcgcagcagcggtaagatggaggtaactacccgtcttattgacatg
tataacttcaaggtggtgatcatcttctgtaacaccaagcgtatggtagatgagctggtg
agcaacctacaggcccgtggctattttgctgacggtttgcatggtgacttgaaccagaac
cagcgtaccaacgtgatgaacaagttcaaagcgggtactttggagattctagtggccaca
gacgttgccgcccgcggtattgacgtggacaacgtagaagcggtgatcaactatgacttg
ccacaagacgaggaaaactacgtgcaccgcattggccgtacgggccgtgccggtaaatct
ggtaaagccttctcttttgtagcaggcagagacctatacaagctgcgtgacattgagcgc
ttcaccaaagccaagattgttcgtcagccggtgcctacgtatgaagacgtagccgaagta
cgcactaccctggtcttggaccaagtgaaggatgtgattgaaaaaggtggtctggctaag
cacgtggtgaaaattgagcgtctgattgaccaggatttcactaccctagatattgcagcc
gctttgttgaagctgttaatgaaagacaccaaaaccaaagagaaaggcgccgaagccaat
gaaagcaaaggcggccctaaaccaggttttgaccgtctgttcatcacccttggcaagaaa
gatcgtctgcaccctaaggacttggtagacatcatgactgataataccagcatacctggt
aacaaggtgggtgatattgacctatatgaccgtttctcttttgtggaggtgccttctgag
tacacgcaagagatcttggaaagactgggcatgaccgaaatcaacggcatgaccgttaaa
ttccagaaagccgagaagaaaaccatggaccctgctgaaggcggccgtgagttgcaagaa
ctagaggatcgtcctagaaaattctatgacaagccttttggcggcggcggtggagaccgt
ggcggcaacagaggtggctttggtggagaccgcggtggttacggcggaggaaacagaggc
ggtggagatcgtggaggcagccgtggcggcttcggcggtggagaccgtgaccgtggaggc
gacagaggcggttcgcgtggtggtgacagaggtggaagccgctttggtggtggagaccgt
gaccgcggcggaaacagcggcggaggcttccgtgaaagaaaaagaagagatttctaa
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