Rufibacter sp. DG15C: TH61_14580
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Entry
TH61_14580 CDS
T04326
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
rud
Rufibacter sp. DG15C
Pathway
rud03030
DNA replication
rud03430
Mismatch repair
rud03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rud00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TH61_14580
03430 Mismatch repair
TH61_14580
03440 Homologous recombination
TH61_14580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rud03032
]
TH61_14580
03400 DNA repair and recombination proteins [BR:
rud03400
]
TH61_14580
Enzymes [BR:
rud01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TH61_14580
DNA replication proteins [BR:
rud03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TH61_14580
DNA repair and recombination proteins [BR:
rud03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TH61_14580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
GIY-YIG
RNase_H_2
DUF7508
GIY_YIG_2
DEDDh_C
DNA_pol_A_exo1
Motif
Other DBs
NCBI-ProteinID:
AMM52164
UniProt:
A0A127B4H5
LinkDB
All DBs
Position
complement(3402827..3404224)
Genome browser
AA seq
465 aa
AA seq
DB search
MYAIIDIETTGSQPSDDRITEIAVFIHDGNQVVDQYSTLINPGRPIPFFISQLTGITDEM
VRDAPKFHEVAKDIVQITDGKVFVAHNVRFDYSFLKKEFSDLGFNFQRKTLCTVRLSRKL
MPGLPSYSLGKLCKSIDIPLRLRHRAIGDAEATAVLFDRLLKIDQAKVDADQDDKLDGGS
ALTKEIKTSLLPPNISREMVDALPLEAGVYYFHDESGEIIYVGKSKSIRKRIIQHFSIDF
KSKKSIEFKNRIASITYERTGSELVALLFESDEIKKRKPFYNRAQRRSVYHSGIFTYTDQ
DGYLRMTFQKAKTEMAPVITLANQFQAKNFLFSRVAKFNLCQKLCDLYKSNGACFDYQVH
QCNGACIGKEAPEEYNKRVQMALDAFKYDHDNFVVIGKGRQPDEKSVVVVENGSYRGFGY
VDESFSASSLEDFLDVIKRYNDNKDTQQILRGYLRTKHTDKVLIF
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
gtgtacgccatcatagacatagaaaccactggtagccaaccctcagacgacagaatcact
gaaatagcagtcttcatccatgacggcaaccaggtggtagaccaatattctacgctcata
aacccaggaaggcccatccccttctttatctcccagctcacgggcatcacagatgagatg
gtgcgcgatgcgcccaagttccatgaggtggccaaagacattgtgcagatcactgacggt
aaagtcttcgtggcccataacgtacgctttgactattccttcctgaaaaaagaattctca
gacttggggtttaactttcagcggaagaccttgtgcaccgtgcgccttagccggaaattg
atgcctggtttgccttcttatagtctgggaaagctttgcaaaagcattgacattcccttg
cgtctgcgtcaccgcgccattggcgacgctgaggcgacggccgttctatttgaccgcctt
ctaaaaatagaccaagccaaagttgacgccgaccaggatgacaaattggatggcggttct
gccttgaccaaggagattaaaacatcgctgctgccacccaatatctctagagaaatggta
gacgcactgcccctggaggcgggtgtgtattactttcatgatgagagtggtgagattatc
tacgtgggtaaaagcaagagcatcagaaaacggattatccagcattttagcattgacttt
aagagcaagaagtccattgagttcaagaaccgcattgccagcatcacctatgagcgcacg
ggcagcgagttggtggccttgttatttgagtctgatgagattaagaagcgcaaacctttt
tacaaccgtgcccaacgccgcagtgtctatcattcgggtattttcacttacacagaccag
gacggttacctgcgcatgacctttcagaaggccaaaactgaaatggcgccggtcatcacg
ctggccaaccaattccaggccaagaactttttgttcagtcgggtggccaagtttaacctt
tgccagaagctctgtgatctgtataaatccaatggggcttgttttgattaccaggtgcac
cagtgcaacggcgcctgtattggcaaggaagccccagaagaatacaacaagcgcgtgcag
atggccttagacgccttcaaatatgaccatgacaattttgtggtgataggcaaaggacgg
cagccagacgagaagtcggtagtagtagtggagaatggtagttaccggggcttcgggtac
gtggatgagtcctttagcgcctctagcttggaagattttctggatgtcattaaacgttac
aatgacaacaaagacacccagcagattttgagaggttacctgagaaccaaacacacggac
aaagttctgattttctaa
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