Rufibacter sp. DG15C: TH61_17525
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Entry
TH61_17525 CDS
T04326
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
rud
Rufibacter sp. DG15C
Pathway
rud03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rud00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TH61_17525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rud03019
]
TH61_17525
03400 DNA repair and recombination proteins [BR:
rud03400
]
TH61_17525
Enzymes [BR:
rud01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TH61_17525
Messenger RNA biogenesis [BR:
rud03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TH61_17525
DNA repair and recombination proteins [BR:
rud03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TH61_17525
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HemN_C
WIYLD
Motif
Other DBs
NCBI-ProteinID:
AMM52619
LinkDB
All DBs
Position
complement(4085865..4087775)
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AA seq
636 aa
AA seq
DB search
MTDHHHILQQYWGYDKFRPGQEDIIASVLAGQDTLAILPTGGGKSICFQVPALAQEGVCL
VVSPLIALMKDQVENLRKRGIAAAALHTGMPKREMDMILDNCVFGAVKFLYVSPERLQTE
LFLERVKRMNVCLLAVDEAHCISQWGYDFRPPYLEIAKLRDILPKVPILALTASATTVVK
ADIQEKLAFKKENVFQQSFARKNLSYSVLAVEDKEARMREILQKMKGTAIIYVRNRRRTQ
ELADWLQRQGIKAAAYHAGLPHQARTTAQTDWIQDRVRVIVATNAFGMGIDKPDVRLVVH
LDLPDSLEAYYQEAGRAGRDGKYSYATVLLGPEDTSLLLKKTTEAYPPMETLKRVYQALA
NFYQLATGSGAFQSFDFDIAEFCRTYQLSAVEVHHSLKQLESEGLLVLNEGFYSPSKVFF
LLEHTALYEFQIMNETLEPVIKGLLRLYGGEMYRDFVKISEAGLAIHLELPEKTVRQQLQ
HLHQRQVLVYEAQHDGPQVQFIQPRADAAKMPLDQKRLNQFRDQALAKAKSVIGYLENGK
QCRTQQILKYFGEESKENCRICDYCLAQKKRLRLEENKLHLEAKVLSHLKEMPLHPKSIA
THFSSSEQELLGDLLQEMLENQLLQYTPEGNLERLK
NT seq
1911 nt
NT seq
+upstream
nt +downstream
nt
atgacagaccatcaccacatcttacagcaatactggggctatgacaaattcaggccgggg
caggaagacatcattgcatcggtcttagccggacaagacaccttggctatcctccccact
ggtggcggaaaatccatttgctttcaagtgccagcgctggcgcaggagggcgtgtgctta
gtggtgtctcccttgattgcgctcatgaaagaccaggtggagaacctgcgtaaacgcggc
attgcggccgctgcgctccacaccggcatgccgaagcgcgagatggacatgattctggac
aattgcgtgttcggcgcggttaagtttctgtacgtctcgccggagcgcttgcagaccgag
ctgtttctggagcgggtcaagcgcatgaacgtttgtctgctggccgtggatgaggcgcac
tgtatttcacagtggggatatgacttccggccaccgtatctggagattgccaagctaaga
gacatcctgccgaaggtgcccatattggccttgactgcttctgctactactgtggtgaag
gcagacatccaggagaagctggccttcaaaaaagagaatgtttttcagcagagcttcgcc
agaaagaacttgtcgtattcggtgctggccgtggaggacaaagaggccagaatgcgcgag
attctacagaagatgaaaggcacagccatcatctatgtgcgcaaccgccgccgcacgcaa
gagttagccgattggctccagcgccagggcatcaaagccgccgcttaccacgccgggctg
ccacaccaagcccgaaccaccgcccaaaccgactggattcaagacagagtgcgcgtgatt
gtggccaccaatgccttcgggatggggattgacaagccagatgtgcgcctggtggtgcac
ctggatttacctgattctctggaggcttattaccaggaagctggtagggcagggcgcgat
ggcaagtacagctatgccacagttttgctgggccctgaggacacgtcactgctcctcaag
aaaaccacggaggcctatcctcccatggaaaccttaaagcgcgtgtaccaggccctggcc
aacttctaccagctggccacgggcagcggcgccttccagtcctttgactttgacatagca
gagttttgtcggacttaccagctttctgccgtagaagtgcaccattcgctcaagcaattg
gagtcagaggggctactggtcttgaacgaaggcttttacagtccgtccaaagtattcttc
ctgctggagcacacggccttgtatgagttccagattatgaacgagacgctggagccggtc
atcaaaggcttgctgcggttgtacggcggcgagatgtaccgcgatttcgtgaaaatctcg
gaggcggggctggccatacatctggaactaccagagaaaaccgttcggcagcaattgcaa
catcttcaccaacgccaagtattggtgtacgaggcccagcacgacggaccccaagtgcaa
ttcattcaacctagggcagatgccgccaaaatgcctctggaccagaagcgcttaaatcag
ttccgggaccaggcgctggccaaagctaaatcggtgattgggtatttggagaatggcaag
caatgtaggacgcagcagatattgaaatacttcggggaggagagtaaggaaaactgccgc
atctgtgattactgtcttgcgcaaaagaagagactccggttggaagaaaacaaactgcac
ctagaagccaaggtgttgagccacctgaaagaaatgcctttgcatcccaagtccatcgcc
acgcattttagttcatctgagcaggagctactaggtgatttgctgcaggaaatgctggag
aatcaattgctacagtataccccagaaggaaatctagagcggttgaagtaa
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