Rufibacter radiotolerans: TH63_02505
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Entry
TH63_02505 CDS
T03996
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ruf
Rufibacter radiotolerans
Pathway
ruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ruf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TH63_02505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ruf03019
]
TH63_02505
03400 DNA repair and recombination proteins [BR:
ruf03400
]
TH63_02505
Enzymes [BR:
ruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TH63_02505
Messenger RNA biogenesis [BR:
ruf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TH63_02505
DNA repair and recombination proteins [BR:
ruf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TH63_02505
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RQC
RecQ-1-like_HTH
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
HTH_40
Helicase_Sgs1
RepB-RCR_reg
RHH_4
Motif
Other DBs
NCBI-ProteinID:
AKQ44749
UniProt:
A0A0H4VLY9
LinkDB
All DBs
Position
594372..596549
Genome browser
AA seq
725 aa
AA seq
DB search
MLVKQESLKDKLKEVFGYSQFRGNQEAIIQNIMAGKNTFVIMPTGAGKSLCYQLPALAME
GTAIVISPLIALMKNQVDQLNAFGVNAQFLNSTLSKAEMNKVKKETVSGAVRLLYVAPES
LTKEDTLDFLRQAKVSFVAIDEAHCISEWGHDFRPEYRKIRGIIDNIGNLPIIALTATAT
PKVQLDIQKNLQMDDASVFKSSFNRTNLYYEVRPKHNTKKQLIQYIKKHKGKSGIIYCLS
RKKVEEIAELLQVNDIKALPYHAGLDSNVRMANQDAFLNEDVDVIVATIAFGMGIDKPDV
RFVIHYDTPKSIEGYYQETGRGGRDGLEGNCLMFYSYDDIVKLEKFSKDKPVTERDNSKL
LLQEMASYADSAVCRRRQLLHYFGEQYDKDCGFCDNCVHPKEKFEAEQELTYALKAVVQT
NQRFGIEHLVHVLIGLKDQYVESYGHDQIEVFGVGKEQEPQFWNSIVRQALLFDYLEKDI
EAFGVLKLTEKGEKFLKSPHAIKFSKDHNFDEEVQQEEEKEETQAAAGHDAVLFDMLKAL
RKKLAKDMNLPPYVLFQDPSIKEMATTYPTTKEDLAHIAGVGMGKVQKFGKPFLELIAKY
VEENDIVTAADVVVKTTVNKSKLKIYVIQQIDKKMDLEEIAASKGITMSELIEEIEHICY
SGTKLNLDYYIDGVLDDDRQQEVIDYFMTSTTDNMATAIKELGTDDYTEDDLRLMRIKFL
SKYAN
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgttagtaaaacaagaatcattaaaggacaaattaaaggaagtttttggctatagtcaa
ttcaggggaaaccaggaggcgattatccagaacatcatggctggcaagaacacgtttgtg
atcatgcctaccggcgccgggaaatcactttgctaccagttgcccgccctggcaatggaa
gggaccgctattgtgatttcgcctttgattgcgctcatgaaaaaccaggtggatcagttg
aacgcgtttggggtgaatgcccagttcctgaactccactctctccaaagcggagatgaac
aaagtgaagaaagaaacggtgagcggcgccgtgcggttattatacgtagcgcccgagtcc
cttaccaaagaagataccctggatttccttcgtcaggccaaagtgtcttttgtagccatt
gacgaggcccactgtatttctgagtggggccatgacttccggccggagtaccgcaagatc
aggggcatcattgacaacataggcaacctgcccatcattgccctcacggccacggccacg
cccaaggtgcagctggacatccagaaaaatctgcagatggatgatgcctcggtgttcaag
tcgtcgtttaaccgcaccaacctgtattacgaggtgcggcccaagcacaacaccaagaag
cagctcatccagtacatcaagaaacacaaaggcaaaagcgggattatctattgcctcagc
cgcaagaaggtagaggagatagccgaacttttgcaggtgaatgatatcaaggccctgccg
taccacgccgggctagactccaacgtgcgcatggccaatcaggacgccttcctcaatgag
gacgtggacgtgattgtggccaccatcgcctttggtatgggcattgacaagccagacgtg
cgctttgtcattcattatgacacgcctaagtccatagaaggctactaccaggaaactggt
cgcggaggccgcgatggtctggaaggcaactgcctcatgttctacagctatgatgacatt
gtcaagctggagaaattcagcaaagacaagcctgtaaccgaacgcgataactccaagctg
ttgctgcaggagatggcctcttacgccgactcagccgtttgccgccgccgccagctgctg
cactactttggtgagcagtatgacaaagactgcggtttctgtgacaactgcgtgcaccct
aaagagaaatttgaggccgagcaggaactgacctatgccctgaaggctgtggtgcagacc
aaccagcgcttcgggattgagcacctggtacacgtgctcatcggtctgaaagaccagtac
gtggagagctacgggcatgaccagatagaggtgtttggcgtgggtaaagagcaggaaccc
cagttctggaattccattgtgcgccaggcgctgctgtttgactacctggagaaagacata
gaggccttcggggtcttgaagctgacggagaaaggggagaagttcctgaaaagcccgcat
gccatcaagttctccaaagaccacaactttgacgaggaggtgcagcaggaagaagagaaa
gaggaaacccaggctgcggccgggcatgacgccgttctttttgacatgctcaaggccctg
cgtaagaaactggcaaaggacatgaacctgccgccctacgtgctcttccaggacccgtct
atcaaagagatggctaccacctaccccaccaccaaagaagacctggcgcatattgccggc
gtgggcatgggcaaggtgcagaagttcgggaagccgttcctggaactgatcgccaaatac
gtagaggagaatgacattgtcaccgccgccgatgtggtggtgaaaaccacggtgaacaag
tcaaagctcaagatctacgtcattcagcagatagacaagaaaatggacctggaggagatt
gccgcctctaaaggtattaccatgtctgagctgattgaggagattgagcacatttgctat
tccggcaccaaactcaacctggactactatatagacggggtgttggatgatgaccgccag
caagaagtgattgactatttcatgacctccaccacagacaacatggccacggccattaaa
gaactgggcaccgatgattacaccgaggacgatctgcgcctgatgcgcatcaagttcctg
tctaaatacgcgaactaa
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