Rufibacter radiotolerans: TH63_05370
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Entry
TH63_05370 CDS
T03996
Name
(GenBank) ATP-dependent helicase
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ruf
Rufibacter radiotolerans
Brite
KEGG Orthology (KO) [BR:
ruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ruf03019
]
TH63_05370
Enzymes [BR:
ruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TH63_05370
Messenger RNA biogenesis [BR:
ruf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
TH63_05370
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
DEAD
Helicase_C
ResIII
CON_HrpB
AAA_30
AAA_19
Motif
Other DBs
NCBI-ProteinID:
AKQ45190
UniProt:
A0A0H4VHL6
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All DBs
Position
complement(1294377..1296929)
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AA seq
850 aa
AA seq
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MPDQTILQSLPELPVKEALPRLLQAMETNARAVLEAPPGAGKTTLVPLALLEAEWRAGGK
ILMLEPRRLAARAAAQRMSDLLGEPVGQTVGYWVRMEHMVSDKTQIEVVTEGILTRLLQN
DPALEGIAAIIFDEFHERSLQADVGLALALDAQAVLRPDLRLLVMSATLDAISVATWLEA
PVITSEGRQYPVETHYLSPAEVAAAGQKPAERLSNLVPKAIRQGLSLEPTGDLLVFLPGM
GEMRRIAQALEGKLPAILDLHLLHGDLNLTQQLAAIRPAPAGRRKVVLATSIAETSLTIE
GVKVVIDGGYARVPKFVPRIGLTTLATIPVSKAAADQRRGRAGRLGPGVCYRLWTSADQL
QLADRHTPEICEADLTGLALELAIWGIQDASALKWLDHPPAAALALARDLLLRLEAIDAS
GKATVHGKALAALGLSPRLGHLVVKGHALGLGTTACDLAALLSDRDLLRPVQLSWADPLP
DLTLRLELLDGQSPPTPGYTVDANAVRKVREQAQNLRQRIREKRAPLQADAIGILTALAY
PDRLGQRESSGRVRLISGQRASLQTELFGEAEFYAVAHLELGNKPRVLTAAPISKEEILH
HFKAQVERLEEVRWDAGTEKIICRQITRLGALTLSETLQPNPDPELVAQALLQALREKGI
QRLPWSEEAKRTLQRLAFLHQLNPSGWPEVSDESLESTFETWLLPHLLGLRSLEQVARLD
FKEILLTDLTWEQRQEMDRLAPSHLEVPSGSRIAVDYAEPAVPVLAVRLQEVFGMLDTPF
IGGGKVPVLMHLLSPASRPVQVTKDLRSFWATGYFEVRKDLRGRYPKHHWPDDPLSAPPT
RGTKKRPWPS
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgccagatcaaaccattcttcaatccttacccgagctaccggtcaaagaagcccttccc
aggctccttcaggccatggaaaccaatgcccgggccgtgctggaagcaccccccggagcc
ggtaaaaccacgctggtccctttggcgttgctggaggccgaatggcgcgccggtggtaag
atactcatgctggagcctcggcgcttagccgcccgggccgccgcccaacgcatgtctgac
ctgctgggagagcccgtgggccagaccgtaggctattgggtgcgcatggagcacatggta
tcagacaagacccagattgaggtagtcaccgaaggcattctgacccgcctcctgcagaat
gaccccgccctggaaggcattgccgccattatttttgacgagtttcatgagcgcagcctg
caggcagacgtaggactagctctggctctggatgcccaggccgtgctccgtccggacctg
cgcctgctggtgatgagtgccactttagacgctatttcagtggccacgtggctggaggcc
ccggtcattaccagtgaaggaaggcagtaccccgtggagacccattacctttcccccgct
gaggtggctgccgccggtcaaaaacccgctgaacgcctgagcaacctggttcccaaagcc
attcggcagggcctgagcctggagcccaccggagacctgctggtattcttgccgggcatg
ggtgaaatgcgccgcattgcccaggccctggaaggcaaactacccgccattttggacctg
cacctgctgcacggagatttaaacctgacccaacagttggccgccatccgtcctgccccg
gctggtcgccggaaagtggtactggcgaccagcatcgccgaaaccagtttgactattgaa
ggcgtgaaagtagtgattgacggtggctacgcccgggtaccgaagtttgtgccccgcata
ggtctcaccaccctggctactattcccgtctctaaggctgccgccgaccagcgccggggc
cgggcgggtcgtttaggtcccggcgtgtgctaccgcctatggacctccgccgaccaactt
cagctagccgaccgacatacccctgaaatctgcgaggcagatctgaccggcctggccctg
gagctggctatctggggaatacaagatgcttctgccctaaagtggctggaccatccgccc
gctgccgccttggcgttggcccgggatcttttattgcggttagaggcgatagatgcttcg
ggcaaagccacggtgcacggcaaggccctggctgctttgggcctctcccctagactgggg
cacctggtggtcaaggggcacgccctgggcctgggcactaccgcctgtgatttggcggca
ttgctctctgaccgggatttgctgcggcccgttcaactttcctgggccgatccgctgcca
gatttaacgttgcgcctggaactcctggacggccaatcgccgcccacgccggggtacacg
gtagacgctaatgccgtacgcaaagtaagggaacaggcccagaacctcaggcagcgcata
cgcgagaaacgggccccgctgcaggcagatgctattggcattttaaccgcccttgcgtac
ccagaccggttaggccagcgcgaatcttcagggcgggtgcggctcatttccgggcagcgg
gcttcgctccagacggagctgtttggggaggcggaattctatgctgtggcgcatctggaa
ctgggcaacaaacccagggttttgacggctgcccctattagtaaagaagaaattctgcac
catttcaaggcgcaggtagagcgactggaggaagtacgttgggacgccggcacagagaaa
atcatttgccgccagattacccgcctgggcgcgctcaccctttctgagaccctgcaaccc
aacccagaccccgagctggtggcccaagccttactacaagctttgcgcgaaaaaggaatt
cagcgcctgccctggtctgaggaggccaaacgcaccctgcagcgcctggcctttctgcac
cagctaaacccgtctgggtggccagaggtatctgacgaatctctggagtcaacctttgag
acctggctcctcccgcaccttctgggtctcaggtctctggagcaggtggcccggctagac
ttcaaggagattctgctcactgaccttacatgggaacaacggcaggaaatggaccgactg
gcgccctcacacctggaggtgcccagcggctcacgtattgctgtagattatgcagaaccg
gcagtcccggttttggccgtgcggttgcaggaagtgttcgggatgttggatacgcctttt
attggcggtggcaaagtgcccgtgctcatgcatcttctttcgccggcctcgcgccccgtg
caagtaaccaaggacctgcgcagtttctgggccactggttactttgaggtccggaaggat
ttgcggggccgttaccccaaacaccactggcccgatgacccactttcagcgccccccacc
agagggaccaagaaacgcccgtggcccagttag
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