Rufibacter radiotolerans: TH63_07955
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Entry
TH63_07955 CDS
T03996
Name
(GenBank) polynucleotide phosphorylase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ruf
Rufibacter radiotolerans
Pathway
ruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ruf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TH63_07955
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ruf03019
]
TH63_07955
03016 Transfer RNA biogenesis [BR:
ruf03016
]
TH63_07955
Enzymes [BR:
ruf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
TH63_07955
Messenger RNA biogenesis [BR:
ruf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
TH63_07955
Transfer RNA biogenesis [BR:
ruf03016
]
Prokaryotic type
tRNA degradation factors
TH63_07955
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
KH_1
PNPase
KH-I_KHDC4-BBP
RNase_II_C_S1
KH_2
S1_RRP5
MOEP19
Motif
Other DBs
NCBI-ProteinID:
AKQ45600
UniProt:
A0A0H4VIJ3
LinkDB
All DBs
Position
complement(1902900..1905050)
Genome browser
AA seq
716 aa
AA seq
DB search
MSYNAITKTIRMANGRDITIETGKLAKQADGSVVVRCGNAMLLATVVSNIGAREGVDFLP
LSVDYQEKFASSGKIPGGFLKREARLSDYEVLISRLVDRILRPMFPDDYHSETQVIINLI
SADAEILPDALAALAASAALSVSDIPFNGPISEVRVARIDGQFQINPLLSDLKRADIDLI
VGGTADSVAMVEGEMSEVSEEDMLEAIRVAHVAIKEQVAVQVELGQAVGKTNKREYSHES
NDLELKELITKAVYEKAYAVAASGNTVKGERKNAFKAIKEEFVASLPEDHTYDATLIGKY
FHDAEKDAVRDVVLKERRRLDGRALDEIRPIWSEINYLPSAHGSAVFTRGETQSLTTVTL
GTKLDEQMIDGAMFSGYNKFMLHYNFPPFSTGEAKPMRGTGRREVGHGNLAMRSLKKVLP
PEDENPYTIRIVSDILESNGSSSMATVCAGTLALMDAGIQIKAPVSGIAMGLIMDETTGN
FAVLSDILGDEDHLGDMDFKVTGTSKGITACQMDIKVKGLSFEILGQALAQARNGRLHIL
GEMNKTISQPNADFKPHTPRSTNIIIEKEFIGAIIGPGGKVIQQIQRDSGAVIQIEEKND
KGYVNVFATNQEAMQMAVSKIKAIVAVPEVGEVYTGKVKSIQPYGAFVEFMAGKDGLLHI
SEVKWERLESMEGVLELGEEIQVKLVDVDPKTGKFKLSRKALLPRPERSEAAPKND
NT seq
2151 nt
NT seq
+upstream
nt +downstream
nt
atgtcatataacgctataactaaaaccatccgcatggccaatggccgtgatattaccatt
gaaaccggcaagcttgccaagcaggctgacggatctgtggtggtacgttgcggaaatgcc
atgttgctggccacggtggtctctaacattggagcccgtgaaggagttgatttccttcca
ttgtctgttgactaccaggagaaattcgcctcttcgggtaaaataccaggtggtttcctg
aaaagagaagcccgtctgtctgactatgaagtattgatcagccgtttggtggatcgtatc
cttcgtcctatgttcccagatgattaccactctgagacccaggtgatcatcaaccttatc
tctgccgatgccgagatcttaccagatgcgttagctgccctggccgcttctgctgccctg
tctgtttctgatattcctttcaacggaccaatctctgaggtgcgtgtggcccgtattgac
ggccagttccagatcaaccctttgctttctgacctgaagcgcgccgatatcgacctgatt
gtaggcggtaccgcagacagcgtggccatggtggaaggtgagatgagcgaggtgtctgaa
gaagacatgctggaagctattcgcgttgcccatgtggccatcaaagagcaggtagctgtt
caggtagagttaggccaggcggtaggaaagactaacaagcgggaatacagccatgagagc
aatgaccttgaattgaaggaattgatcaccaaggcagtgtatgaaaaagcgtatgccgtg
gctgcctctggcaataccgttaaaggcgagcgtaagaatgcctttaaagccatcaaagaa
gagtttgtcgcttctctgccagaagatcatacctatgacgccaccctcatcggaaaatat
ttccatgatgcagagaaagacgccgtacgtgacgtggtcttaaaagagcgtcgccgttta
gatggccgtgccctggacgagatcagacctatctggtcagagatcaactacctgccgtcg
gcgcacggttctgcggtattcacccgcggtgagacccagtcgttgaccactgttacctta
ggtactaaattagatgagcagatgattgatggcgccatgttctctggctacaacaaattc
atgctgcattataacttcccaccgttctctaccggtgaggccaagcctatgcgcggtacc
ggccgtagagaagtaggacacggtaacctggccatgcgttctttgaagaaggtattgccg
ccggaagatgaaaacccatacaccatccgtattgtctctgacatcctggagtctaacggt
tcttcttccatggctaccgtttgtgctggaaccctggccctgatggatgctggtatccag
atcaaagcaccggtttctggtatagccatgggtctgatcatggacgaaaccacaggtaac
tttgccgttctttctgacatcttaggagatgaagatcatctgggtgacatggactttaaa
gtaaccggtacttctaaaggcatcaccgcctgccagatggacatcaaagtgaaaggtcta
tcctttgagatcctgggtcaggcattggcacaggccagaaacggccgtctgcacatctta
ggtgagatgaacaaaaccatctctcagcctaacgcagatttcaaaccgcataccccgcgt
tctaccaatatcatcattgagaaagaattcattggcgctatcattgggccaggcggtaaa
gtaatccagcagatccagcgtgattctggtgccgttatccaaattgaggagaaaaacgac
aaaggctacgtgaatgtgttcgccacgaaccaggaagcgatgcaaatggccgtctctaag
atcaaagccattgtggctgttcctgaggtaggagaggtgtacaccggtaaggtaaaatct
atccagccatacggggcctttgtagagttcatggccggcaaagacggcctgttgcatatc
tctgaggtgaaatgggagcgtctggaaagtatggaaggtgtactggaactaggggaggaa
atccaggtgaaactggtagacgttgaccctaagaccggtaaattcaagctatctcgcaaa
gcgttgctgccaagaccagagcgctcagaagcagctcctaaaaacgactaa
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