Rufibacter radiotolerans: TH63_08355
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Entry
TH63_08355 CDS
T03996
Name
(GenBank) RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ruf
Rufibacter radiotolerans
Pathway
ruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ruf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TH63_08355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ruf03019
]
TH63_08355
03009 Ribosome biogenesis [BR:
ruf03009
]
TH63_08355
Enzymes [BR:
ruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TH63_08355
Messenger RNA biogenesis [BR:
ruf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TH63_08355
Ribosome biogenesis [BR:
ruf03009
]
Prokaryotic type
rRNA helicases
TH63_08355
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
AKQ45660
UniProt:
A0A0H4VIN9
LinkDB
All DBs
Position
complement(1994531..1996444)
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AA seq
637 aa
AA seq
DB search
MERIKFQELPLSEEIQRAIVDLGYEEASPIQTAAIPVLLEGRDVIGQAQTGTGKTAAFAI
PTIEGIDPNNREVQALILCPTRELAIQVSEEIQKLVKYKKGISVVPIYGGQPYERQLRAL
RQGVQIVIGTPGRVMDHIERGTLKLETTKTIILDEADEMLDMGFREDIEFVLSHMPENRQ
TVFFSATMSKPIMELTRKYQTNPEIVKVTQQQLTVTNIEQIYFEVRSGGKMDVTTRLIDM
YNFKVVIIFCNTKRMVDELVGHLQARGYFADGLHGDLNQNQRSNVMGKFKAGTLEILVAT
DVAARGIDVDNVEAVINYDLPQDDESYVHRIGRTGRAGKSGKAFSFVAGRDLYKLRDIER
FTKAKIIRQNVPTYEDVAEVRTTLLLDQVKEVIAKGSLAKYVLKVERLVDQDLTTMDIAA
ALLKLVMKDTKNKEKSAEAGEAKGGPKAGFDRLFVTLGKKDRLHPKDLVDILTNSTSIPG
GKVGDIDLYDRFSFIEVPTEYTPEILERLSVTEINGMTVKFQKAEKKNMDPAEGGRELQE
LEDRPRKKFYDKPFGDRDRGGDRGGSRGGYGGDRDRSGDRGGYGGNRGGGSYGDRDRGGD
RGGSAGGGSRFGGGDRGGRSSGGSGGGSFRERKRRDY
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggaaagaattaaattccaggagcttccgttgtcggaagaaatccagcgcgctatcgtg
gacttaggctacgaagaagcttctcctattcagactgccgctattccggtgttattggaa
ggtcgtgatgttatcgggcaagcccagaccggtacaggtaaaaccgccgccttcgccata
cctactattgaaggtattgaccctaacaaccgtgaagtacaggcgctcatcctttgccca
acccgtgagttggctattcaggtatcagaggagatacagaaacttgtaaaatacaaaaaa
ggcatcagcgtagtgcctatctatggtggtcagccctatgagcgccaattacgcgccctc
cgtcagggggtacagatcgtgatcgggacgcccggccgtgtgatggaccacattgaaaga
ggaactcttaaactggaaaccaccaaaaccatcatccttgatgaggctgatgaaatgctg
gacatgggattccgggaagacattgagtttgtgctgagccatatgccagaaaaccgccag
acggtgttcttctcggctacaatgagcaagccaatcatggagctgacgcgcaagtaccag
accaatcctgagattgtgaaggtaacccagcagcaactgaccgtgaccaatattgagcag
atctactttgaggttcgcagtggcggcaagatggatgtaaccacccgtcttattgacatg
tacaactttaaggtggtaatcatcttctgtaacaccaaacgcatggtagacgagctggta
ggacacctacaggcccgcggctacttcgccgatggcttacacggtgacctgaaccaaaac
cagcgttccaacgtgatgggcaagttcaaagccggtacgctggaaattctagtggctacc
gacgttgccgcccgtggtattgacgttgacaacgtggaagccgtaatcaactatgacctt
ccgcaggatgatgaaagctacgtacaccgtattggccgtactggccgtgccggtaagtct
ggaaaagccttctcgtttgtggcaggccgtgacctttacaaacttcgtgacattgagcgc
ttcaccaaagcgaagatcatccgtcagaacgtgcctacctatgaagatgtagccgaggtg
cgcaccaccttgctgttagaccaggtgaaagaggtaattgctaagggtagcttggccaag
tatgtccttaaagtggaacgcctggttgaccaggatttaactaccatggatattgccgct
gccttgctgaaattggtgatgaaagacaccaagaacaaagagaagagcgccgaagccggt
gaggccaaaggtggccctaaagccgggtttgaccgtctgtttgtgacccttggcaagaaa
gaccgtctgcaccccaaagacctggtagatatccttaccaacagcaccagcatccctggt
ggcaaagtaggtgatattgatctgtatgaccggttcagcttcattgaagtaccaaccgaa
tacacccctgaaattctggagcgcttatcagttactgaaatcaacggcatgaccgtgaaa
ttccagaaagctgagaagaagaacatggaccctgccgaaggcggacgtgagctacaggag
ctggaagaccgtcctagaaagaaattctatgacaagccatttggcgacagagatcgtggc
ggtgaccgtggtggcagcagaggcggctacggcggagaccgtgaccgtagcggcgaccga
ggtggctacggcggaaaccgcggtggcggtagctatggcgaccgtgaccgaggtggtgac
cgtggcggcagcgccggcggaggaagtcgcttcggcggtggagaccgtggtggtcgcagc
agcggtggcagcggtggcggaagcttccgggaaagaaaaagaagagattactaa
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