Rufibacter radiotolerans: TH63_10275
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Entry
TH63_10275 CDS
T03996
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ruf
Rufibacter radiotolerans
Pathway
ruf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ruf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TH63_10275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ruf03019
]
TH63_10275
03400 DNA repair and recombination proteins [BR:
ruf03400
]
TH63_10275
Enzymes [BR:
ruf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TH63_10275
Messenger RNA biogenesis [BR:
ruf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TH63_10275
DNA repair and recombination proteins [BR:
ruf03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TH63_10275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Helicase_C
DEAD
RecQ_Zn_bind
DnaD_N
HemN_C
Motif
Other DBs
NCBI-ProteinID:
AKQ47615
UniProt:
A0A0H4VNW8
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All DBs
Position
complement(2463538..2465382)
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AA seq
614 aa
AA seq
DB search
MIKAVLAGEDTLAILPTGGGKSICFQVPALALGGVCVVVSPLIALMKDQVENLRKRGISA
AALHSGQPERERDLILDNCVFGGTSFLYVSPERLQTELFLERVKRMNVCLLAVDEAHCIS
QWGYDFRPPYLEIAKLREVLPKVPVLALTASATEVVKADIQEKLQFKKPQVFQQSFARKN
LSYSVLATEDKEGRLGEILQKMPGTAIVYVRNRRRTQELADWLKKQNIKAAAYHAGLPHQ
TRTAAQTDWLQDRVRVIVATNAFGMGIDKPDVRLVVHLDLPDSLEAYYQEAGRAGRDGKY
SYATVLLGPEDTSLLLKKTKEAYPPIETIKRVYQALANYYQLATGSGAFQSFDFDLADFS
RTYQLAPVEVHHSLKQLESEGLLQMNEGFYSPSKVNFLLGNTALYEFQLLNETLEPLIKG
LLRLYGGEMFRDFVKIAEAGLAKHLNLHEKTIKQQLQHLHQRKVLVYEAQHDGPQVQFLT
PRFDAATLPLDQKRLTQFRERALEKAQSVVAYMTNTKECRTNQILAYFGEIATSNCRICD
YCLAQKKKKKLEENKLHLEARVLSHLKETPLHPKSIAIHFSSSEQDLLGDLLQEMLESNL
LRYTPDGNLERIGL
NT seq
1845 nt
NT seq
+upstream
nt +downstream
nt
atcattaaggcggttttggctggggaagatactttagctattctgcctactggcggcggg
aaatctatctgttttcaggtgccggcgttggccttagggggcgtttgcgtggtggtgagc
cctttgattgcgcttatgaaagatcaggtggagaatcttcggaaacggggtatttctgcg
gcggctttacattcggggcaacccgagcgggagcgggacctaatcctggataactgcgtt
tttggcgggaccagctttctgtacgtgtcgccggagcggttgcagaccgagcttttcctg
gagcgcgtaaagcgaatgaacgtgtgcctgctggctgtggatgaggcgcactgtatctcc
cagtggggctatgattttcggccgccgtatttagagattgccaagctgcgcgaggtgctg
ccaaaagtaccggtgttggcgctcacggcctcggccaccgaggtggtgaaagccgatatc
caggagaagctacaattcaaaaagccgcaggtgtttcagcagagcttcgctcggaagaac
ttgtcttattctgttcttgccaccgaagacaaggaaggacggttgggggagatcctgcag
aaaatgccgggtacggccattgtgtacgtacgcaaccgccgccgcacccaggaactggcc
gactggctcaaaaaacagaacataaaagccgcagcctaccacgccggactcccgcaccaa
acccgaaccgctgcccaaaccgattggctacaggaccgcgtgcgggttattgtggctacc
aacgccttcgggatggggattgacaaaccagacgtgcggctggtggtgcacctggacctg
cccgattccctggaggcctattaccaggaggccggccgggcgggccgcgacgggaaatac
agctatgccacggtgctgctgggccccgaagatacttccttgctgcttaagaaaacaaag
gaagcgtacccacctatagagaccattaaacgggtgtatcaggcgctagccaattactac
cagctggccaccgggagcggcgccttccagtcctttgactttgacctggctgacttcagc
cgcacgtatcaattagccccggtagaggtgcatcactctttaaagcagctggagtctgaa
ggtttgctgcaaatgaacgaaggtttctatagcccatccaaagtgaatttccttctagga
aacaccgccttgtatgaatttcaactcctgaatgagaccctggaacccttgatcaaaggc
ttgctgcggctgtatggtggcgagatgttccgggacttcgtgaagatagcagaggcgggg
ctggccaaacacctgaacctgcacgagaaaaccataaagcagcaattgcagcacctgcac
cagcgcaaggtcttggtctatgaggcgcagcatgacggtccgcaggtacaatttttaacg
ccgcggtttgatgccgctacattgcctctggaccaaaagcggttaacgcagtttagggaa
cgggccctggaaaaggcccagagcgtggtggcgtatatgaccaataccaaagagtgccgt
accaatcagatactggcttattttggggagatagctacctccaattgccgcatctgtgac
tattgcctggcccagaagaaaaagaagaaactggaggagaacaaactccacctggaagcg
cgcgtgctaagccacctaaaggaaacgcctttgcacccaaagtccatcgccatccatttc
agttcttcggagcaagatttactgggtgacctgctgcaggaaatgctggagagcaaccta
cttcggtacacaccagacggtaacctagaacggattggcctgtag
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