Rufibacter radiotolerans: TH63_13235
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Entry
TH63_13235 CDS
T03996
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ruf
Rufibacter radiotolerans
Pathway
ruf03030
DNA replication
ruf03430
Mismatch repair
ruf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ruf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TH63_13235
03430 Mismatch repair
TH63_13235
03440 Homologous recombination
TH63_13235
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ruf03032
]
TH63_13235
03400 DNA repair and recombination proteins [BR:
ruf03400
]
TH63_13235
Enzymes [BR:
ruf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
TH63_13235
DNA replication proteins [BR:
ruf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
TH63_13235
DNA repair and recombination proteins [BR:
ruf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
TH63_13235
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
MCM10_OB
T2SSK
Motif
Other DBs
NCBI-ProteinID:
AKQ46369
UniProt:
A0A0H4VRH5
LinkDB
All DBs
Position
3196913..3200548
Genome browser
AA seq
1211 aa
AA seq
DB search
MPDFSHLHTHTQYSLLDGAASISGLMKKAQADGMKAVAMTDHGNMFGAFNFVAEANKYNV
KPIVGCEFYLVNDRHQKTFTKEVKDVRHHQLLLAKDQEGYQNLAKLCSYSYIDGLYSKWP
RIDKELLVKYHKGLIATSCCIGAELPQAILWKGEEEAEKLLKWWLDLFGDDYYIEIQRHG
LMNIDNTGLSQEDVNQVLLRFAIKYNVKVICTNDSHYVEQTDWNAHDILLCVNTGEQESV
PVGDFQTQYFRMMSGSGEVIYDTLTNIRNTYGNDENVRRMLYRIEEEQQKPRPQDRFGFP
NDQFFFKSQAEMNHLFADVPFAVDNTNEIVDKITPPKLQRDILLPNFPLPPEHPTADLFL
RHLTFEGAKKRYHEITQEVEERLNYELGIIETMGFAGYFLITQDFINKGRSMGVAVGPGR
GSAAGSAVAYCVGITNIDPIKYALLFERFLNPERVSMPDIDIDFDDVNRQRVIDYVVDKY
GKTQVAQIITFGTMAAKSSIKDVARAMDLPLSEANELAKMVPEVPGTTLAKAFIESPELA
SIRDGNDLRAKVLKLAEKLEGSVRNTGIHAAGVIIAPDDITNYIPVSTSKDSDLLVTQFD
GKVIESAGMLKMDFLGLKTLSILKDAMALIKRNHGVEIDIDNIPLDDEKTYALYQRGDTI
GTFQFESEGMRMYLKDLKPTNIEDLIAMNALYRPGPMQFIPNFINRKQGREEVEYPHILL
EPLLKNTYGIMVYQEQIMQTAQVLAGYSLGGADLLRRAMGKKDMKKMAQEREKFVAGAKE
IHNIPAKHASEVFDVMEKFAQYGFNRSHSAAYSVVAYQTGYLKAHYPAEYMAAVLTHNMN
DIKKVTFFIEEARKQQIQVLGPDVNESIHQFNVNQQGQIRFGMGAVKGTGEAAVEAIIEE
REKTGPYTDVFDFAKRVNLRAVNKKTFESLAQAGAFDSFERYHRAQYIETPPGETINLLE
KAVRFGNQFQAEKSAAQQSLFGGGGAVDMPLPKVPDVQPWSLTEMLRREKEVIGFYLSGH
PLDQFKLEIDSYCTCSLDRIEEFKGRDVNVAGIISNVVMRTGKNGNPFLLFSLEDYDNTM
GLALFGEDFVKFSPYVKEGMYLFIRAKVTLRYKSEDQWELKPLSMQLLSDVAEKMAKGVR
MDIDIRNINAMLIDRLEEAAIASPGQKKLELVLTEPGERLAVELFSRKYRIDPKTFLQNV
KELEVATCQLI
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
gtgccagatttttcccacctccatacccatacccaatactcgttgctagacggggccgcc
agcattagcggactcatgaagaaggcccaagccgatggcatgaaagccgtcgccatgacc
gaccacggcaacatgtttggggcgttcaacttcgtggccgaggccaacaagtacaacgtg
aaacccattgtgggctgtgagttctatctggtgaacgaccggcaccagaagaccttcacc
aaggaggtaaaagacgtgcgccaccaccagctgctcctggctaaagaccaggaaggctac
cagaacctggccaagctctgctcctactcctacattgacggcctctacagcaaatggccc
cgcattgacaaggaactgctggtcaaataccacaaaggcctcatcgccacctcctgctgc
attggcgctgaactgccacaggccattctctggaaaggcgaggaagaagccgagaaactc
ctgaaatggtggctggacttgttcggcgacgattactacattgagattcagcgccacggt
ctcatgaacattgataacactggcctgtctcaggaagacgtaaaccaggtattgctcaga
tttgccatcaagtacaacgtcaaggttatctgtactaatgactcgcactacgtagagcaa
accgattggaatgcgcacgacatcttgctatgcgtgaacaccggcgagcaggaaagtgta
cccgtaggcgatttccagacgcagtatttcaggatgatgtctgggagcggtgaggttatt
tatgacacgctcactaatatcagaaacacctacggaaacgatgagaacgtgcgccgtatg
ctgtaccgcatagaggaagaacagcagaaaccgcgtcctcaggaccgatttgggttcccg
aatgaccagttcttcttcaagtctcaggcagagatgaaccatctgttcgcggacgtgccc
ttcgccgtggacaacacaaacgagattgtagacaagattacgccgcctaagctgcagcgc
gatatcctgttacccaacttcccgttgcctccggagcaccccacggcagacttgttcctg
cgccacttaacctttgaaggggccaagaagcgctaccatgagattacccaagaggtagag
gagcgcctgaactacgagctgggcattattgagaccatgggttttgcgggttacttcctc
attacccaggacttcatcaacaaaggccggagcatgggcgtggccgtgggtccgggtcgg
gggtcggcggcgggctctgccgtggcctactgcgtgggtatcaccaacattgaccctatc
aagtacgccctgctgtttgagcgtttcctgaacccagaacgggtttccatgcccgatatt
gatattgactttgacgacgtgaaccggcagcgcgtgattgactacgtggtagacaagtac
ggcaagacgcaggtggcccaaatcatcacgttcggtaccatggcggccaaatcgtctatc
aaagacgtggcccgcgccatggacttgcctttatctgaggccaatgaactggccaagatg
gtccccgaggtgcccggaactacgctggcaaaggcgtttatagaatcgcctgagctcgcc
tccatcagagatggcaatgaccttcgggcgaaggttttgaaactagcagaaaagctggaa
ggctccgtgcgaaacacgggtattcacgcggcgggggtgattatcgcgccagatgacatc
accaactacattccggtgtccacgtccaaggactctgacctgttggtgacccagtttgac
ggcaaggtgattgaaagcgctggcatgctgaagatggactttttgggcctgaaaaccctg
tccatcctgaaagacgccatggcgcttatcaagcgtaaccacggcgtggagattgacatt
gacaacattccgctggacgacgaaaaaacctacgccctttaccagcgcggtgacaccata
ggcacgttccagtttgagtctgagggcatgcgcatgtacctcaaagacctgaagcccacc
aacattgaagacttgattgccatgaacgccttgtaccgtccgggcccgatgcagttcatc
ccgaacttcattaaccggaaacagggccgtgaggaagtagaatacccgcacatattgctg
gaaccgctcctcaagaacacctacggcatcatggtgtaccaggagcagattatgcagacg
gcgcaggtgttggcgggttactcattgggtggagcagatttgcttcgccgtgcgatgggt
aagaaggacatgaagaaaatggcccaggagcgcgaaaaattcgtggccggagccaaagag
attcataacatccccgccaagcacgcctctgaggtgtttgacgtgatggagaagtttgcg
cagtacgggttcaaccgctcgcactccgccgcctactctgtggttgcttaccaaaccggt
tacctcaaagcgcattatcctgccgagtacatggccgccgtgctcacccacaacatgaac
gacatcaagaaggtgacgttctttattgaggaggcgcgcaaacagcagattcaggttcta
gggccagacgtgaacgaatccatccaccagttcaacgtgaaccagcaagggcaaatccgt
ttcgggatgggcgccgtgaaaggcaccggcgaggccgccgtggaagccatcattgaggag
cgcgagaaaaccggcccgtacaccgatgtctttgattttgccaagcgcgtgaacctgcgc
gccgtgaacaaaaagacctttgaaagcttggctcaggcgggtgcgtttgactcctttgag
cgctaccaccgcgcccagtacatagaaaccccgcccggcgaaaccatcaacctgctggaa
aaggccgtccgtttcgggaaccagttccaggccgagaaaagcgccgctcaacagtctttg
ttcgggggtggcggtgccgtagatatgccgttacccaaagtaccagacgtacagccctgg
tccctgactgagatgcttcgccgtgagaaagaggtgattggcttctacctgtcgggccac
ccgctggaccagttcaagctggagattgactcctactgcacctgtagcctggaccgcatt
gaagagttcaaaggccgcgacgtgaacgtggccggcatcatcagcaacgtggtcatgcgc
accggcaaaaacggcaacccgttcctgctcttctcgctggaggattatgacaacaccatg
ggcctggccttgttcggcgaagactttgtgaaattctcgccctacgtgaaggaaggcatg
tacctgttcatccgggccaaagtgacgttgcgctacaagtctgaggaccagtgggaattg
aaaccgctctccatgcaactgctttcagatgtggccgagaaaatggccaaaggcgtgcgc
atggatattgacattagaaacatcaacgctatgctcattgaccggttggaggaagcggct
attgccagcccaggtcagaagaagctggagcttgtattgacggagcccggtgaacgtttg
gcggtggagttgttcagccggaaataccgcattgacccgaagacgtttttgcagaatgtg
aaagagttggaggtggcaacgtgtcagttgatttga
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