Rufibacter radiotolerans: TH63_14105
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Entry
TH63_14105 CDS
T03996
Name
(GenBank) protein RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ruf
Rufibacter radiotolerans
Brite
KEGG Orthology (KO) [BR:
ruf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ruf03016
]
TH63_14105
Enzymes [BR:
ruf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
TH63_14105
Transfer RNA biogenesis [BR:
ruf03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
TH63_14105
Prokaryotic type
tRNA splicing ligases
TH63_14105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Reg_prop
Motif
Other DBs
NCBI-ProteinID:
AKQ46500
UniProt:
A0A0H4VL14
LinkDB
All DBs
Position
complement(3449938..3451161)
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AA seq
407 aa
AA seq
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MAIVLNNITVFGEEIIDQSAIDQIQRCVSEEDIGVLTADAHYGYAHPIGGAVAYKNHVSL
SGVGFDIGCGNKAVRTDLLAQDVDIARIMNQIVRSIGFGVGRPNPKPIDHPVLDHIGKAD
FRPQRELKKLAAEQLGTVGSGNHFIDLFEDEEGYLWIGVHFGSRGFGHRTATGFIAMSQG
LGFFDKAKEGPMDGPPILFDIQSALGQDYIAAMSLAGEYAYAGRDVVVEKVLQILGAKST
EMIHNHHNFAWFERHQGEDYWVVRKGCTPAFPGQKGFIGANMSDNSVIIEGVESELSVRG
LYSTVHGAGRLLSRRAAAGKTKWMRDKNGVKRKTVVSKGLVDFDAVQQRMKEKGIELRGA
GADEAPEAYKKLEDVLKYQGNTIRVLHTLKPLGVAMAGEDVYDPYKD
NT seq
1224 nt
NT seq
+upstream
nt +downstream
nt
atggctattgtcttgaacaacatcaccgtttttggggaagagattattgaccaaagcgcc
attgaccaaatccagcgctgcgtgagcgaagaagacattggcgtgctcaccgccgatgcc
cattacggctacgcgcaccccattggcggcgcggtggcttacaagaaccacgtgtcgctc
tctggggtggggtttgacattggctgcggcaacaaagccgtgcgcaccgacctgctggcg
caagacgtggacattgcccgcatcatgaaccagatcgtgcgcagcatcggttttggcgta
gggcggcccaaccccaaacccattgaccaccccgtgctggaccacatcggcaaagccgat
tttagaccccagcgcgaacttaaaaaactagccgcggaacagctgggcaccgtgggcagc
ggcaaccatttcatagacctgttcgaggacgaggaaggctacctctggattggcgtgcac
ttcgggtcccggggcttcgggcaccggaccgccaccgggtttattgccatgtcacagggc
ctcggtttttttgacaaagccaaggaaggccccatggatggaccgcctatcttgtttgat
attcaatctgccctgggccaggactacatagccgccatgtctctggccggcgaatacgcc
tacgcgggccgcgatgtggtggtagaaaaagtgctacagattctgggcgccaagtccacg
gaaatgatccacaaccaccacaacttcgcgtggtttgagcggcaccagggtgaagactac
tgggtagtgcgtaagggctgtactcccgctttccccgggcagaaaggctttattggggct
aatatgtctgacaattctgtaatcatagagggcgtggaaagtgagctgtccgttcgggga
ttatattctacagtacacggcgcgggccgcctgctcagccgccgggccgccgcaggcaag
accaaatggatgcgcgacaaaaacggcgtgaaacgtaaaacagtggtatctaagggtctg
gtagattttgacgccgtacaacagcgcatgaaagaaaaaggcattgaactgcgtggcgcc
ggtgccgatgaagcccccgaagcctataagaaactggaagacgtcctgaagtaccagggc
aacaccatacgcgtactgcacaccctcaaaccgctgggcgtagccatggccggggaagat
gtgtatgacccgtacaaagattga
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