Rufibacter radiotolerans: TH63_15135
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Entry
TH63_15135 CDS
T03996
Name
(GenBank) DNA-formamidopyrimidine glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ruf
Rufibacter radiotolerans
Pathway
ruf03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ruf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TH63_15135
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ruf03400
]
TH63_15135
Enzymes [BR:
ruf01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
TH63_15135
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
TH63_15135
DNA repair and recombination proteins [BR:
ruf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
TH63_15135
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Zn_ribbon_6
Zn_Tnp_IS91
Zn_ribbon_TFIIB
Zn_ribbon_SprT
Motif
Other DBs
NCBI-ProteinID:
AKQ46653
UniProt:
A0A0H4VMV4
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All DBs
Position
complement(3736055..3736870)
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AA seq
271 aa
AA seq
DB search
MPELPEVETYRRFIDETSLYQPIREVEVQDPKRQLQVDLDDFRKALLGNQFTGTHRIGKQ
LFLLTAQGPIVTMHFGMTGDVAYYRDAADTPRFARSVFHFENGFQFAFLDSRKFGRLGLT
ESVEAFRKQKKLGPDALTLTTEELTQGLAKKKSAIKPLLLDQRIAPGVGNWIADEVLFQA
QLEPERPANTLQPVEVDRLATAIREVLETAVAAEAIYRDFPSHYLIHAREWDEAPTSTSG
GTHLNCPRCQTLIQKKYVSGRATYFCPQCQV
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcccgagttaccagaggtagaaacctatagaagattcattgacgaaaccagcttgtac
caacccatacgcgaggtagaggtgcaggaccccaaacgccagctgcaggtagacctggac
gatttcaggaaggctctgctgggcaaccagttcacgggcacgcaccgcattggcaagcag
ctttttctgctcacggcgcaagggcctattgtgaccatgcacttcgggatgaccggcgat
gtggcctactaccgtgacgccgcagacacgccccgctttgcccggtcggtcttccacttt
gagaacggctttcagttcgcgtttctggactcccgtaagtttgggcggctggggctgact
gaaagcgtggaggcgttccggaagcagaagaaactgggtcctgatgccctcaccctcact
actgaggaactgacccagggcctggccaaaaagaaatctgccataaagccgctgctcctg
gaccagcgcattgcgcccggcgtgggcaactggatagccgatgaagtgctgttccaggcc
cagctggaacccgagcgcccggccaatacattacagcccgtagaagtagaccgcctggcc
accgccatcagggaagtgctggaaaccgccgttgccgccgaggccatttaccgcgatttc
ccgtcacactacctgatccatgcccgcgaatgggacgaggcacccacctcgacttctggc
ggaactcacctgaactgtccccgctgccagacactcatccagaagaaatacgtgagcggc
cgggccacgtatttctgcccgcagtgccaggtgtag
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