Rufibacter radiotolerans: TH63_16240
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Entry
TH63_16240 CDS
T03996
Name
(GenBank) RNA polymerase sigma54 factor
KO
K03092
RNA polymerase sigma-54 factor
Organism
ruf
Rufibacter radiotolerans
Pathway
ruf02020
Two-component system
ruf02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ruf00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TH63_16240
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TH63_16240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ruf03021
]
TH63_16240
Transcription machinery [BR:
ruf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TH63_16240
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma54_CBD
Sigma54_DBD
Sigma54_AID
WHD_RNase_R
LacI
SF3b1
HTH_IclR
HTH_21
Motif
Other DBs
NCBI-ProteinID:
AKQ46825
UniProt:
A0A0H4VLX5
LinkDB
All DBs
Position
complement(3998856..4000334)
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AA seq
492 aa
AA seq
DB search
MQRLDLKQLLSQKLSPQQIQFIKLLQVPTAELEARIKEELEVNPALEEGDTADEPTDNDD
SSSDADDDFDNTEDDFAEEEARRDDDDVNIEDYLNDDEIAGYKMQGDGPGEEEDREMPIA
FTGSLTDALMDQLGFLNLNEKQLAIGEQLIGSIDQDGYIRRDLQAISNDLAFSQNIEASE
QEIEDVLRRIQAFDPPGIAARDLQECLLLQLERREPDEVTEVAEQIIQETFDEFTKKHYS
KIQQKLELEDHELKAAIDLILKLNPKPGGTGGATRIQYVIPDFIITNEDGQLQLSLNARN
APDLRISRSYADMFDAYDKSAKTDKKLKETVTFVKQKLDAAKWFIDAIKQRQNTLLRTME
AILRRQYDYFLEGDESKLKPMILKDIAEDIGMDISTVSRVANSKSVQTEFGIIPLKFFFS
EGIATDAGEDASSREVKSILKDIIEAENKRKPLSDDKIEKMLNEKGYNIARRTVAKYREQ
LNIPVARLRKEL
NT seq
1479 nt
NT seq
+upstream
nt +downstream
nt
atgcagagacttgacttaaaacaacttttatcgcagaagctgtcgccgcagcagattcag
ttcattaaactgttgcaggtgcctaccgcagaattggaggcccgcatcaaagaagagctg
gaggtaaaccctgccctggaggaaggcgataccgccgatgagcctaccgacaacgatgat
tccagcagtgatgccgatgacgatttcgacaacaccgaggatgactttgccgaggaggag
gcccgccgcgacgacgatgacgtgaacatagaggactacctcaacgacgacgagattgcc
ggctacaaaatgcagggcgatggtcccggcgaggaagaggaccgcgaaatgcccatcgcg
ttcaccggctccctcaccgatgccctcatggaccagctggggttcctgaacctcaacgag
aagcaattggccattggcgagcagctcattggctccattgaccaggacggctacatacgc
cgtgacctgcaggccatctccaatgacctggccttttcccagaacatagaagcctctgag
caggagatagaagacgtgctgcgccgcatacaggcctttgacccgcccggcattgccgcc
cgtgacctgcaggagtgcctcttgctgcaactggagcgccgcgagcccgatgaggtgacc
gaggtagccgagcaaatcattcaggagacctttgacgagttcaccaagaaacactacagc
aagatacagcagaagctggaactggaagaccatgagctaaaggccgccattgacctgatt
ctcaagctcaaccccaagcccggcggaaccggcggtgccacccgcatccagtacgtgatc
ccagacttcatcatcaccaatgaagacgggcaactgcagctttctttgaatgcgcgtaac
gccccagacctgcgcatttcccgctcctacgccgatatgtttgacgcctatgacaaaagc
gccaaaaccgacaagaaactcaaggagacggtcacgtttgtcaagcagaaactggatgcc
gccaaatggtttattgatgccatcaagcagcgccagaacaccttgctgcgtaccatggaa
gccattctacgccgccagtatgactatttcctggaaggcgatgagagcaagctcaagccc
atgatcctcaaggatatcgccgaggacattggcatggatatctccacggtgagccgggtg
gccaacagcaaaagtgtgcagactgagttcgggatcattcccttaaagttcttcttctct
gagggcattgccaccgatgccggcgaggacgccagcagccgcgaggtgaaatccattctc
aaagacattattgaggccgagaacaagcgcaagcccctctctgatgacaagattgaaaag
atgctcaatgagaaaggctataacattgcccgccgcaccgtggccaagtaccgtgagcag
ctcaatatccccgtggcccgccttcgcaaagaactatag
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