KEGG   Rufibacter radiotolerans: TH63_18305
Entry
TH63_18305        CDS       T03996                                 
Name
(GenBank) DNA polymerase I
  KO
K02335  DNA polymerase I [EC:2.7.7.7]
Organism
ruf  Rufibacter radiotolerans
Pathway
ruf03030  DNA replication
ruf03410  Base excision repair
ruf03420  Nucleotide excision repair
ruf03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:ruf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TH63_18305
   03410 Base excision repair
    TH63_18305
   03420 Nucleotide excision repair
    TH63_18305
   03440 Homologous recombination
    TH63_18305
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:ruf03032]
    TH63_18305
   03400 DNA repair and recombination proteins [BR:ruf03400]
    TH63_18305
Enzymes [BR:ruf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     TH63_18305
DNA replication proteins [BR:ruf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     TH63_18305
DNA repair and recombination proteins [BR:ruf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA polymerase I
     TH63_18305
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TH63_18305
SSDB
Motif
Pfam: DNA_pol_A 5_3_exonuc_N DNA_pol_A_exo1 5_3_exonuc DNA_polI_exo1 HHH_2 HHH_5 DNA_pol_lambd_f Slu7
Other DBs
NCBI-ProteinID: AKQ47820
UniProt: A0A0H4VPG8
LinkDB
Position
4493264..4496134
AA seq 956 aa
MSTPDKRLFLLDAMALIYRAHFAFSKNPRINSKGMNTGAALGFTNTLVDLLNREKPTHIG
VCYDAPSKTFRHDNFVEYKANRQAMPEDISIAIPYVKKIVAAFGIPGMMLDGFEADDIIG
TLSCKAEKAGFDVFMMTPDKDYYQLVTDHVFVYKPAFLGNAIEVIDKPKVLERWEISNVK
QVIDILGLQGDAVDNIPGIPGIGEKTAKTLIQKYGSVENLIAHSHELKGKQKENVETYAE
QGLMSKELATIHLDVPIDFDEQGLLYEGPDMDKLAALFDELEFRQLATRVLGTASPAVPK
PISNKPTVGKGFKSDKPMGQTSLFDMPAGETMAPEEGAERETAGGEYVTGIRKTIDTTLH
EYHLLTTPEQRQQLLKYLKLQKEVSFDTETTSIDAITARLVGISFCYLPGEAYYIPVPPQ
DEDAAREIVQEFKEILESPTITKIGQNIKYDLVVLQRYGIDVQGPLFDTMLAHYLLEPDM
RHNMDLLAETYLHYTPIAIETLLGKGKHQLTMDKLPALQIYEYACEDADVTLQLKNYFDP
LLEKQGLKRLFNDVENPLVRVLGHMEREGVSIDAEALAESSVSLQASIQEIEQKIFNLAG
MEFNIGSPKQLGEVLFDRMQLGGNKIKKTKTGQYATGEEILSKLAFEHEIVQLILDHRQL
TKLKSTYVDALPQLICKEDNRLHTSYNQAVAATGRLSSTNPNLQNIPIRTEKGREIRKAF
VPRDENHVLLSADYSQIELRIMAHFSNDATMKEAFQKGLDIHASTAAKVFHVPVEEVDSD
MRRKAKTINFGIIYGISAFGLAERLAIPRREAAEIIEAYFQEFPAVKQYMDSAINEAREK
EFVETLLGRRRYLRDINSRNQNVRGYAERNAINAPIQGTAADIIKIAMINIDQWLREQKL
ASRMILQVHDELVFDVLKDELPIVQPKIEELMKNAFPLSVPMEVGLGTGENWLQAH
NT seq 2871 nt   +upstreamnt  +downstreamnt
atgagtacaccagacaaacgcctgtttctgctagacgccatggcgctcatttaccgggcc
cacttcgcgttcagtaagaaccccagaatcaactccaaaggcatgaataccggcgccgcg
ctgggctttaccaacacgttggtagacctgctcaaccgcgagaagcctacccatattggc
gtgtgctatgacgcgccttccaagaccttccggcacgacaattttgtggagtacaaggcc
aatcggcaggccatgcccgaagatatctccatcgccataccctacgtgaagaagattgtg
gccgccttcgggatacccggcatgatgctggacgggtttgaggccgatgacatcattggc
acgctttcctgcaaggctgagaaagccgggtttgacgtcttcatgatgaccccggacaag
gactactatcaactggtcaccgaccacgtcttcgtctataagccggcgtttctgggcaac
gccattgaggtcatagacaaacccaaggtgctggagcgctgggagatcagtaacgtaaag
caggtgattgacattctggggttgcagggcgatgccgtggataatatacccggtataccc
ggaataggcgagaaaaccgcgaagacgctcatccagaaatatgggtcggtggagaacctc
attgcccactcccatgagctcaaaggcaagcagaaagagaacgtggaaacgtatgccgag
caaggcctgatgtccaaggaactggccaccattcacctggacgtgcccattgactttgac
gagcagggcctgctgtatgaaggcccggatatggacaagctggctgcgctgtttgatgag
ctggagttccggcaattggccacccgcgtgctgggtaccgcctcgccggccgttccaaag
cccatctccaacaaacccactgtgggcaaaggctttaagtctgacaagcctatggggcag
acctctttgtttgacatgcctgcgggggagaccatggccccggaagaaggtgccgaacgg
gaaaccgccggtggggaatatgtaaccggcatcaggaaaaccattgacaccactttgcat
gaataccatttgctgaccaccccagaacaacggcagcaattgcttaaatatttaaaactg
cagaaagaggtgtcctttgacaccgagaccaccagcatagacgccattacggcccgtctg
gtgggcatctcattctgttatctgcctggcgaggcctattacataccggtgcccccacag
gatgaggacgccgcccgcgagatagtgcaggagttcaaggagattctggagagccccacc
attaccaagattggccagaacattaagtatgacctggtggtgctgcagcgctacggcata
gacgtgcaaggtccgctctttgacaccatgctggcccactacctgctggagcccgacatg
cgccacaacatggacctgctcgccgagacgtatctgcactacacccccatcgctattgaa
acgctgctgggcaaaggcaagcaccagctcaccatggataagctgcccgctttgcagatt
tatgaatatgcctgtgaagacgcagatgtcaccctgcaactcaaaaactactttgaccca
cttttagaaaaacaaggcctgaaacgcctgttcaatgacgtggagaacccgctggtgcgc
gtgctgggccacatggagcgcgaaggcgtaagcatagacgctgaggcgctggccgagtct
tcagtctcactgcaggccagcatacaggaaattgagcagaagatcttcaacctggcgggc
atggaattcaacatcgggtcgcctaagcagttgggtgaggtgctgtttgaccgtatgcag
ttgggcggaaataagatcaaaaaaaccaaaaccgggcagtatgccaccggcgaagagatc
ttgtccaagctggcctttgagcacgagattgtgcagctcattctggaccaccggcaactc
accaaactcaagagcacctacgtggacgccctgccgcaattgatttgcaaagaggataac
cgtctgcacacatcttacaaccaggccgtggccgctaccggccgattgagctccaccaac
cccaacctgcagaacatccccatcaggacagagaagggccgcgagatacgcaaagccttc
gtgccccgtgatgaaaaccacgtgctgctgtctgcagattattcgcagattgagctaaga
atcatggcgcacttcagcaatgacgccaccatgaaagaggccttccagaagggcttggac
attcacgcttctacggccgccaaggtgttccacgtgcccgtggaggaggtggactcagac
atgcgccgcaaggctaagaccatcaacttcgggatcatctacggtatctccgcgttcggc
ctggccgaacgcctggctattccgcgccgcgaggccgccgagatcattgaagcctatttc
caggagtttccggcggtgaagcagtacatggacagcgccatcaacgaggcccgcgagaag
gaatttgtggagaccctgctgggccgccgccgctacctgcgggatatcaacagccgcaac
cagaacgtacgcggctacgccgaacgaaacgccatcaacgcacctatccagggcactgcg
gcagacatcatcaagattgccatgatcaacattgaccaatggctgcgcgagcagaagctg
gccagccgcatgatcttgcaggtgcatgatgaattggtgtttgacgtgcttaaagacgaa
ttacctattgtgcagcctaagattgaggagctcatgaaaaacgccttcccgctgagcgta
cctatggaggtgggcctgggaaccggtgagaactggctacaggcgcactag

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