Ruficoccus sp. ZRK36: K0V07_05470
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Entry
K0V07_05470 CDS
T07427
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
rufi
Ruficoccus sp. ZRK36
Pathway
rufi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rufi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
K0V07_05470 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rufi03400
]
K0V07_05470 (uvrB)
DNA repair and recombination proteins [BR:
rufi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K0V07_05470 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
K0V07_05470 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
UVR
ResIII
DEAD
AAA_16
AAA_30
AAA_22
DUF87
Motif
Other DBs
NCBI-ProteinID:
QYY37484
LinkDB
All DBs
Position
1246856..1248853
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AA seq
665 aa
AA seq
DB search
MGDQPAAIEKLVNSVQAGNPYQTLLGVTGSGKTFTVANVIERVQRPTLIMSHNKTLAAQL
YSELKAFFPNNAVEYFVSYYDYYQPEAYVPSSDTYIEKDSSINDEIERLRIAATSSLISR
RDVIVVASVSCIYGLGSPEDFEEMMIPIRVGEELGRDRFLERLVENLYTRNDVVLSRGNF
RVRGEVVDVFPAYMESAIRIEFWGDEVESIQALDPLTGDTGERMEHFQLYPANQYITPRR
KLETAVKAIREELDGRIAELEKDQRLVEAQRLRMRTEYDIELLQEMGFCSGIENYSRHLS
GRKSGERPWCLIDFFPDDFLLVLDESHATWPQIGAMYKGDRSRKERLVEYGFRLPSALDN
RPLRSEEFQEVTGQTIFVSATPAAYELEHSSVIAEQVIRPTGLLDPIMELRPIKGQVEHL
IGEVKSAAERGERVLVTTLTKRMSEDLTTYLRESGARVEYLHSDIDAIERVEILRNLRRG
DFDVLVGVNLLREGLDLPEVSLVAILDADKEGFLRSETSLIQTAGRAARHEKGRVILYAD
VMTDSLRRTLEVTDKRRQKQAAYNAEHGITPRSVKRGLQASLHVPGASDEADAVNVAEAG
GDEDVAIVLAELESEMLEAAANLEFERAAVLRDQIDALKSGEARGGFSGKRRKSASRKKK
SGRRR
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgggcgaccagcctgcggcgattgagaagctcgtgaactcggtgcaggcgggtaacccc
taccagaccctgctcggggtcactggctcggggaagacctttaccgtggccaatgtgatc
gagcgcgtgcagcggcctacgctcatcatgtcgcataacaagacgctggcggcgcagctg
tactcggagctgaaggcgtttttcccgaacaatgcggtcgagtacttcgtcagctactac
gactactaccagcccgaggcctatgtgccctcgtccgacacgtacatcgagaaagactcc
tccatcaacgacgagatcgagcgtctgcgcatcgcggccaccagctcgctgatcagccgc
cgggatgtgatcgtggtggccagtgtctcgtgtatttatgggctgggctcaccggaagac
tttgaggagatgatgatcccgatccgcgtgggcgaggaactcgggcgggaccgctttctg
gagcggctggtggagaacctctacacgcgcaacgatgtggtgctctcgcggggaaatttc
cgggtgcgtggtgaggtggtggatgtctttcccgcctacatggagagcgcgattcggatc
gagttctggggggacgaggtggagtccatccaggcgcttgacccgctcaccggcgatact
ggcgagcgcatggagcactttcagctctatccggccaaccagtacatcaccccgcgccgg
aagctcgagaccgccgtcaaggccatccgtgaggagctggacgggcggattgccgagctg
gagaaggaccagcgactggtcgaggctcagcgtctgcgcatgcgtaccgagtatgatatc
gagctgttacaggagatgggcttttgcagcggcatcgagaactattcgcgccacctgagc
ggtcgtaagtccggcgaacgcccctggtgcctgatcgactttttcccggacgacttcctg
ctcgtgctcgacgagagccacgccacctggccgcagatcggggccatgtacaagggtgac
cgttcgcgaaaggagcggctggtcgagtacggctttcggctgccctcggcgctggataac
cgcccgctgcgcagcgaggagtttcaggaggtgacggggcagacaatctttgtctcggcc
accccggcggcctatgaactggagcactccagcgtcatcgctgagcaggtgattcggccg
actggcttgctggaccccatcatggagctgcgcccgatcaaggggcaggtcgagcacctt
attggcgaggtcaagtccgctgccgagcgtggcgagcgggtgctcgtgacgacgctgacc
aagcgcatgtccgaggacctcacgacctacctgcgcgagtctggggcgcgcgtcgagtac
ctgcactcggacatcgatgcgatcgagcgggtggagatccttcgtaatctgcgcagagga
gacttcgacgtgctggttggcgtgaacctcctgcgtgaaggccttgacctgcccgaggtt
tcgctggtggcgatcctggacgcggacaaggagggctttctgcggagtgagaccagcctg
attcagacagctggtcgcgctgcccggcacgagaagggccgtgtgatcctctatgctgac
gtgatgaccgactcgctgcgtcgaacgctggaggtgaccgataagcgtcgtcagaagcag
gcggcctataatgcggagcacgggatcacgccgcgctcagtcaagcgaggcctccaggcg
agcctgcatgtgccgggggcaagcgatgaggcagatgcggtcaatgtcgccgaggccggc
ggcgacgaggatgtcgctatcgtactggccgagctggaaagcgagatgctcgaagccgcc
gcgaatctggagttcgagcgcgccgccgtgctgcgggatcagatcgatgcgctcaaaagc
ggggaggctaggggcggcttctcagggaagcgccgcaaatcagcctcacgtaaaaagaaa
agcggccgccgacgatag
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